eF-site ID 3j3w-0256ACDEGJKLNPQRSTUX PDB Code 3j3w Chain 0, 2, 5, 6, A, C, D, E, G, J, K, L, N, P, Q, R, S, T, U, X click to enlarge Title Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a) Classification RIBOSOME Compound ribosome RNA 23S Source ORGANISM_SCIENTIFIC: Bacillus subtilis; Sequence 0:  AVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHR VCKACGSYNGKDINV 2:  MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRK VLSA 5:  AKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDAT VEVAFRLGVDPRKNDQQDKAGNIHVPIGKVSFEDEKLVEN FTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSST 6:  MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCK EFNARTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLK KAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAAD VEAAMRMVEGTARSMGIVIED A:  GGUUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACU AGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCG GGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUG GGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUG AAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAA CAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCC CUGAGUAGCGGCGAGCGAAACGGGAUUAGCCCAAACCAAG AGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGU UACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCC GCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCU CUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUU CCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUAC UCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAG GUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAA ACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGA UGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCC CGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAG CGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCC GAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGG UAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAG UGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGA ACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGC UAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUG GACUAGGGGCCCCUACCGGGUUACCGAAUUCAGUCAAACU CCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAG UGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGC CAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUG UGGAGUUGCUUAGACAACCAGGAUGUUGGCUUAGAAGCAG CCACCAUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGUG ACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCG AAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUU CUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCG CUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGG UGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGA AGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGG CCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUG UACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGA GGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCA GUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGGCU GAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUG AUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGG UGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAA UCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGC AAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUA GGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGC GACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAG GCGAAGUAUAGGGGCUGACGCCUGCGCGGCCGUAACUAUA ACGGUCCUAAGGUAGCGAAAGGCGCAACGAUCUGGGCACU GUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAA GAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGA GCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGU ACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUU CGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGA CCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGU CAGGUGGGCAGUUUGGUGAUCCGGUGGUUCCGCAUGGAAG GGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACA GGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUU GGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGU CAGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUAC GCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCU AUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUU AGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCA GUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGA CGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCU CAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCU GAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGG CGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUU AACCA C:  MAIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKK GGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVAT VEYDPNRSANIALINYADGEKRYILAPKGIQVGTEIMSGP EADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGT SAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQH ELINIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP IGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKNK D:  KGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAE NDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKE LRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGA IKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPG RMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITV KSAVKS E:  PKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQR ASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSP QWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDN NIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANE AVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEK VEEVLA G:  LEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVED NVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGL ELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPS QTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGE VVR J:  MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGK HKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQ HPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMF KKLNVYRGSEHPHEAQKPEVYEL K:  MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIV CTVKQATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFD ENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPE VI L:  MKLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNA RSGGGVRPGFEGGQMPLFQRLPKRGFTNINRKEYAVVNLD KLNGFAEGTEVTPELLLETGVISKLNAGVKILGNGKLEKK LTVKANKFSASAKEAVEAAGGTAEVI N:  MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKEL RSVVEKMITLGKRGDLHARRQAAAYIRNEVANEENNQDAL QKLFSDIATRYEERQGGYTRIMKLGPRRGDGAPMAIIELV P:  KLIEDITKEQLRTDLPAFRPGDTLRVHVKVVEGNRERIQI FEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPKIA KIEVVRYGKVRRAKLYYLRELRGKAARIKEIR Q:  PRVKGGTVTRKRRKKVLKLAKGYFGSKHTLYKVANQQVMK SGNYAFRDRRQKKRDFRKLWITRINAAARMNGLSYSRLMH GLKLSGIEVNRKMLADLAVNDLTAFNQLADAAKAQLN R:  MYAIIKTGGKQIKVEEGQTVYIEKLAAEAGETVTFEDVLF VGGDNVKVGNPTVEGATVTAKVEKQGRAKKITVFRYKPKK NVHKKQGHRQPYTKVTIEKINA S:  MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTP RAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGP TLKRFRPRAMGRASQINKRTSHITIVVSEKKE T:  MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVK DAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAI VKLTADSKEIEIFEA U:  MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNM VKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTR VGYKVEDGKKVRVAKKSGQVLDK X:  MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENT ARIREVRKAIARMKTVIRERE Description Functional site 1) chain K residue 60-86 type prosite sequence AVIVRTKSGARRSDGSYISFDENACVI description RIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrtksgarrs.DGsyisFdeNacVI source prosite : PS00049 2) chain T residue 77-92 type prosite sequence RKAIVKLTADSKEIEI description RIBOSOMAL_L23 Ribosomal protein L23 signature. RKAIVKLTadskeieI source prosite : PS00050 3) chain 6 residue 126-141 type prosite sequence RMVEGTARSMGIVIED description RIBOSOMAL_L11 Ribosomal protein L11 signature. RmVeGTarSMGiVIeD source prosite : PS00359 4) chain S residue 83-107 type prosite sequence KRFRPRAMGRASQINKRTSHITIVV description RIBOSOMAL_L22 Ribosomal protein L22 signature. KrfRpRAmGRasqinkrtSHITIvV source prosite : PS00464 5) chain C residue 218-229 type prosite sequence PTVRGSVMNPND description RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGSVmNPnD source prosite : PS00467 6) chain D residue 102-125 type prosite sequence FSAGEIVDVTGVSKGKGFQGAIKR description RIBOSOMAL_L3 Ribosomal protein L3 signature. FsageivDvtGvSkGKGfqGaikR source prosite : PS00474 7) chain L residue 110-140 type prosite sequence KILGNGKLEKKLTVKANKFSASAKEAVEAAG description RIBOSOMAL_L15 Ribosomal protein L15 signature. KILGnGkLekk..LtVkankFSasAkeaVeaaG source prosite : PS00475 8) chain G residue 155-163 type prosite sequence PEPYKGKGI description RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI source prosite : PS00525 9) chain X residue 39-53 type prosite sequence NTARIREVRKAIARM description RIBOSOMAL_L29 Ribosomal protein L29 signature. NTARIReVRKAIARM source prosite : PS00579 10) chain J residue 106-128 type prosite sequence IKGMLPKGSLGRQMFKKLNVYRG description RIBOSOMAL_L13 Ribosomal protein L13 signature. IKGMLPkgsl.GRqmfkkLnVYrG source prosite : PS00783 11) chain 2 residue 2-21 type prosite sequence KRTFQPNNRKRSKVHGFRSR description RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpnnrkRskvh.GFrsR source prosite : PS00784 12) chain Q residue 54-70 type prosite sequence KRDFRKLWITRINAAAR description RIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRkLWITRINaaaR source prosite : PS00937 13) chain P residue 86-101 type prosite sequence VVRYGKVRRAKLYYLR description RIBOSOMAL_L19 Ribosomal protein L19 signature. VvRyGKVR.RAKLYYLR source prosite : PS01015 14) chain U residue 6-23 type prosite sequence GDKVMVISGKDKGKQGTI description RIBOSOMAL_L24 Ribosomal protein L24 signature. GDkVmVIsGkdKGkq.GtI source prosite : PS01108 15) chain N residue 30-52 type prosite sequence IETTETRAKELRSVVEKMITLGK description RIBOSOMAL_L17 Ribosomal protein L17 signature. IeTTetRaKelrsvvEkMITlGK source prosite : PS01167 16) chain R residue 71-93 type prosite sequence ITVFRYKPKKNVHKKQGHRQPYT description RIBOSOMAL_L21 Ribosomal protein L21 signature. ItvfRykpKKnvhkkqGHRQpyT source prosite : PS01169

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