eF-site ID 3j2t-I
PDB Code 3j2t
Chain I

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Title An improved model of the human apoptosome
Classification APOPTOSIS
Compound Apoptotic protease-activating factor 1
Source ORGANISM_COMMON: bovine; ORGANISM_SCIENTIFIC: Bos taurus;
Sequence I:  GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKT
GQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKM
IFAGIKKKGEREDLIAYLKKATNE
Description (1)  Apoptotic protease-activating factor 1, Cytochrome c


Functional site

1) chain I
residue 13
type
sequence K
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

2) chain I
residue 14
type
sequence C
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

3) chain I
residue 16
type
sequence Q
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

4) chain I
residue 17
type
sequence C
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

5) chain I
residue 18
type
sequence H
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

6) chain I
residue 28
type
sequence T
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

7) chain I
residue 30
type
sequence P
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

8) chain I
residue 40
type
sequence T
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

9) chain I
residue 41
type
sequence G
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

10) chain I
residue 48
type
sequence Y
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

11) chain I
residue 49
type
sequence T
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

12) chain I
residue 52
type
sequence N
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

13) chain I
residue 59
type
sequence W
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

14) chain I
residue 67
type
sequence Y
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

15) chain I
residue 68
type
sequence L
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

16) chain I
residue 78
type
sequence T
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

17) chain I
residue 79
type
sequence K
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

18) chain I
residue 80
type
sequence M
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

19) chain I
residue 81
type
sequence I
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

20) chain I
residue 82
type
sequence F
description BINDING SITE FOR RESIDUE HEM I 500
source : AC9

21) chain I
residue 14
type BINDING
sequence C
description covalent
source Swiss-Prot : SWS_FT_FI1

22) chain I
residue 17
type BINDING
sequence C
description covalent
source Swiss-Prot : SWS_FT_FI1

23) chain I
residue 18
type BINDING
sequence H
description axial binding residue
source Swiss-Prot : SWS_FT_FI2

24) chain I
residue 80
type BINDING
sequence M
description axial binding residue
source Swiss-Prot : SWS_FT_FI2

25) chain I
residue 1
type MOD_RES
sequence G
description N-acetylglycine => ECO:0000269|PubMed:5933874
source Swiss-Prot : SWS_FT_FI3

26) chain I
residue 48
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000269|PubMed:16866357
source Swiss-Prot : SWS_FT_FI4

27) chain I
residue 55
type MOD_RES
sequence K
description N6-succinyllysine => ECO:0000250|UniProtKB:P62897
source Swiss-Prot : SWS_FT_FI5

28) chain I
residue 72
type MOD_RES
sequence K
description N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62897
source Swiss-Prot : SWS_FT_FI6

29) chain I
residue 97
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000269|PubMed:18471988
source Swiss-Prot : SWS_FT_FI7

30) chain I
residue 99
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P62897
source Swiss-Prot : SWS_FT_FI8


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