|
eF-site ID
|
3i6k-A |
PDB Code
|
3i6k |
Chain
|
A |
|
click to enlarge
|
|
Title
|
Newly identified epitope from SARS-CoV membrane protein complexed with HLA-A*0201 |
Classification
|
IMMUNE SYSTEM |
Compound
|
HLA class I histocompatibility antigen, A-2 alpha chain |
Source
|
Homo sapiens (Human) (Q692E0_CVHSA) |
|
Sequence
|
A: |
GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDA
ASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG
KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYL
EGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT
LRCWALSFYPAEITLTWQRDGEDQTTELVETRPAGDGTFQ
KWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
257-263 |
type |
prosite |
sequence |
YTCHVQH
|
description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCHVQH
|
source |
prosite : PS00290
|
|
2)
|
chain |
A |
residue |
84 |
type |
MOD_RES |
sequence |
Y
|
description |
Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
3)
|
chain |
A |
residue |
143 |
type |
MOD_RES |
sequence |
T
|
description |
Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
4)
|
chain |
A |
residue |
146 |
type |
MOD_RES |
sequence |
K
|
description |
Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
5)
|
chain |
A |
residue |
171 |
type |
MOD_RES |
sequence |
Y
|
description |
Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
6)
|
chain |
A |
residue |
86 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
|
|