eF-site ID 3i4n-A PDB Code 3i4n Chain A click to enlarge Title 8-oxoguanine containing RNA polymerase II elongation complex E Classification TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID Compound DNA-directed RNA polymerase II subunit RPB1 Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence A:  VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETM DETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHF GHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNEL MRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQL VSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRV LSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPV PPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEH NGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRP VKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLEL DQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDP VLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNAD FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCM GIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIP TPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPK DNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQV CAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITE TIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRF LNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQM SACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVE NSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL VKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQ SLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILG DLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIR RIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQA FDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTL KVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAK LIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQL HFSLLDEQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQT FKNDLFVIWSEDNDEKLIIRCRVVRPKAEEDHMLKKIENT MLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVL ETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRA ALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTR HGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSE NVILGQMAPIGTGAFDVMIDEESLVKYMP Description Functional site 1) chain A residue 481 type sequence D description BINDING SITE FOR RESIDUE MG A 2458 source : AC1 2) chain A residue 483 type sequence D description BINDING SITE FOR RESIDUE MG A 2458 source : AC1 3) chain A residue 485 type sequence D description BINDING SITE FOR RESIDUE MG A 2458 source : AC1 4) chain A residue 107 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 5) chain A residue 108 type sequence M description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 6) chain A residue 110 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 7) chain A residue 148 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 8) chain A residue 167 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 9) chain A residue 67 type sequence C description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 10) chain A residue 70 type sequence C description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 11) chain A residue 77 type sequence C description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 12) chain A residue 80 type sequence H description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 13) chain A residue 483 type catalytic sequence D description 788 source MCSA : MCSA1 14) chain A residue 485 type catalytic sequence D description 788 source MCSA : MCSA1 15) chain A residue 483 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 16) chain A residue 485 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1 17) chain A residue 107 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 18) chain A residue 110 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 19) chain A residue 148 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 20) chain A residue 167 type ZN_FING sequence C description C4-type source Swiss-Prot : SWS_FT_FI1 21) chain A residue 481 type ZN_FING sequence D description C4-type source Swiss-Prot : SWS_FT_FI1

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