eF-site ID 3i4n-A PDB Code 3i4n Chain A click to enlarge Title 8-oxoguanine containing RNA polymerase II elongation complex E Classification TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID Compound DNA-directed RNA polymerase II subunit RPB1 Source ORGANISM_COMMON: baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence A:  VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETM DETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHF GHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNEL MRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQL VSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRV LSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPV PPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEH NGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRP VKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLEL DQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDP VLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNAD FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCM GIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIP TPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPK DNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQV CAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITE TIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRF LNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQM SACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVE NSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL VKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQ SLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILG DLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIR RIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQA FDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTL KVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAK LIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQL HFSLLDEQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQT FKNDLFVIWSEDNDEKLIIRCRVVRPKAEEDHMLKKIENT MLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVL ETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRA ALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTR HGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSE NVILGQMAPIGTGAFDVMIDEESLVKYMP Description Functional site 1) chain A residue 481 type sequence D description BINDING SITE FOR RESIDUE MG A 2458 source : AC1 2) chain A residue 483 type sequence D description BINDING SITE FOR RESIDUE MG A 2458 source : AC1 3) chain A residue 485 type sequence D description BINDING SITE FOR RESIDUE MG A 2458 source : AC1 4) chain A residue 107 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 5) chain A residue 108 type sequence M description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 6) chain A residue 110 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 7) chain A residue 148 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 8) chain A residue 167 type sequence C description BINDING SITE FOR RESIDUE ZN A 2456 source : AC2 9) chain A residue 67 type sequence C description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 10) chain A residue 70 type sequence C description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 11) chain A residue 77 type sequence C description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 12) chain A residue 80 type sequence H description BINDING SITE FOR RESIDUE ZN A 2457 source : AC3 13) chain A residue 1350 type MOD_RES sequence K description Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956 source Swiss-Prot : SWS_FT_FI3 14) chain A residue 483 type MOD_RES sequence D description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 15) chain A residue 485 type MOD_RES sequence D description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 16) chain A residue 107 type MOD_RES sequence C description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 17) chain A residue 110 type MOD_RES sequence C description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 18) chain A residue 148 type MOD_RES sequence C description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 19) chain A residue 167 type MOD_RES sequence C description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 20) chain A residue 481 type MOD_RES sequence D description N-acetylmethionine => ECO:0007744|PubMed:22814378 source Swiss-Prot : SWS_FT_FI1 21) chain A residue 1246 type CROSSLNK sequence K description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:32142654, ECO:0007744|PubMed:22106047 source Swiss-Prot : SWS_FT_FI4 22) chain A residue 483 type catalytic sequence D description 788 source MCSA : MCSA1 23) chain A residue 485 type catalytic sequence D description 788 source MCSA : MCSA1

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