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eF-site ID
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3hoy-B |
PDB Code
|
3hoy |
Chain
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B |
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click to enlarge
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Title
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Complete RNA polymerase II elongation complex VI |
Classification
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TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID |
Compound
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DNA-directed RNA polymerase II subunit RPB1 |
Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
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B: |
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLIISFGKIYVTKPMVNESDGVTHALYPQEAR
LRNLTYSSGLFVDVKKRKVFIGRLPIMLRSKNCYLSEATE
SDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVF
KKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSA
RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVN
DWQMLEMLKPCVEDGFVIQDRETALDFIGRKEKRIQYAKD
ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKD
QDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR
TVELAINAKTITSGLKYALATGNWGAGVSQVLNRYTYSST
LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ
ACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVP
HQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINP
EVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKEL
KVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEES
ILIAMQPEDLEPAEADVDPAKRIRVSHHATTFTHCEIHPS
MILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYN
VRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVA
IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKY
GMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVS
GEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQD
GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDM
PFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSG
NEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGK
KLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPV
EGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFR
VHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYA
AKLLFQELMAMNITPRLYTDRSRDF
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Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
1163 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
|
2)
|
chain |
B |
residue |
1166 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
|
3)
|
chain |
B |
residue |
1182 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
|
4)
|
chain |
B |
residue |
1185 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 2225
|
source |
: AC4
|
|
5)
|
chain |
B |
residue |
837 |
type |
catalytic |
sequence |
D
|
description |
788
|
source |
MCSA : MCSA1
|
|
6)
|
chain |
B |
residue |
977-989 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
|
|
7)
|
chain |
B |
residue |
1185 |
type |
BINDING |
sequence |
C
|
description |
|
source |
Swiss-Prot : SWS_FT_FI2
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