eF-site ID 3h1u-A
PDB Code 3h1u
Chain A

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Title Structure of ubiquitin in complex with Cd ions
Classification SIGNALING PROTEIN
Compound Ubiquitin
Source ORGANISM_COMMON: bovine; ORGANISM_SCIENTIFIC: Bos taurus;
Sequence A:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
Description


Functional site

1) chain A
residue 64
type
sequence E
description BINDING SITE FOR RESIDUE CD A 77
source : AC1

2) chain A
residue 68
type
sequence H
description BINDING SITE FOR RESIDUE CD A 77
source : AC1

3) chain A
residue 1
type
sequence M
description BINDING SITE FOR RESIDUE CD A 78
source : AC2

4) chain A
residue 16
type
sequence E
description BINDING SITE FOR RESIDUE CD A 78
source : AC2

5) chain A
residue 32
type
sequence D
description BINDING SITE FOR RESIDUE CD A 78
source : AC2

6) chain A
residue 18
type
sequence E
description BINDING SITE FOR RESIDUE CD A 79
source : AC3

7) chain A
residue 18
type
sequence E
description BINDING SITE FOR RESIDUE CD A 79
source : AC3

8) chain A
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE CD A 79
source : AC3

9) chain A
residue 29
type
sequence K
description BINDING SITE FOR RESIDUE CD A 79
source : AC3

10) chain A
residue 75
type
sequence G
description BINDING SITE FOR RESIDUE CD B 78
source : AC5

11) chain A
residue 6
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

12) chain A
residue 11
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

13) chain A
residue 27
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

14) chain A
residue 29
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

15) chain A
residue 33
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

16) chain A
residue 48
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

17) chain A
residue 63
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI5

18) chain A
residue 54
type SITE
sequence R
description Interacts with activating enzyme
source Swiss-Prot : SWS_FT_FI1

19) chain A
residue 72
type SITE
sequence R
description Interacts with activating enzyme
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 68
type SITE
sequence H
description Essential for function
source Swiss-Prot : SWS_FT_FI2

21) chain A
residue 65
type MOD_RES
sequence S
description Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P0CG48
source Swiss-Prot : SWS_FT_FI3

22) chain A
residue 27-52
type prosite
sequence KAKIQDKEGIPPDQQRLIFAGKQLED
description UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
source prosite : PS00299


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