|
eF-site ID
|
3gtl-B |
PDB Code
|
3gtl |
Chain
|
B |
|
click to enlarge
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Title
|
Backtracked RNA polymerase II complex with 13mer with G<>U mismatch |
Classification
|
TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRID |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
|
ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
|
Sequence
|
B: |
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLIISFGKIYVTKPMVNESDGVTHALYPQEAR
LRNLTYSSGLFVDVKKKVFIGRLPIMLRSKNCYLSEATES
DLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFK
KAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR
TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVND
WQMLEMLKPCVEDGFVIQDRETALDFIGKEKRIQYAKDIL
QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQD
DRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTV
ELAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLN
RYTYSSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEG
QACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYV
PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN
PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKE
LKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEE
SILIAMQPEDLEPAEADVDPAKRIRVSHHATTFTHCEIHP
SMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNY
NVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIV
AIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKK
YGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRV
SGEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQ
DGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRRED
MPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS
GNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG
KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQP
VEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAF
RVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPY
AAKLLFQELMAMNITPRLYTDRSRDF
|
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Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
1163 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 1307
|
source |
: AC3
|
|
2)
|
chain |
B |
residue |
1166 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 1307
|
source |
: AC3
|
|
3)
|
chain |
B |
residue |
1182 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 1307
|
source |
: AC3
|
|
4)
|
chain |
B |
residue |
1185 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN B 1307
|
source |
: AC3
|
|
5)
|
chain |
B |
residue |
837 |
type |
catalytic |
sequence |
D
|
description |
788
|
source |
MCSA : MCSA1
|
|
6)
|
chain |
B |
residue |
977-989 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
|
|
7)
|
chain |
B |
residue |
1185 |
type |
BINDING |
sequence |
C
|
description |
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
|
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