eF-site ID 3gtg-I PDB Code 3gtg Chain I click to enlarge Title Backtracked RNA polymerase II complex with 12mer RNA Classification TRANSCRIPTION, TRANSFERASE/DNA/RNA HYBRID Compound DNA-directed RNA polymerase II subunit RPB1 Source ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; Sequence I:  TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP LVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSR ENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ Description Functional site 1) chain I residue 7 type sequence C description BINDING SITE FOR RESIDUE ZN I 203 source : AC5 2) chain I residue 10 type sequence C description BINDING SITE FOR RESIDUE ZN I 203 source : AC5 3) chain I residue 29 type sequence C description BINDING SITE FOR RESIDUE ZN I 203 source : AC5 4) chain I residue 32 type sequence C description BINDING SITE FOR RESIDUE ZN I 203 source : AC5 5) chain I residue 75 type sequence C description BINDING SITE FOR RESIDUE ZN I 204 source : AC6 6) chain I residue 78 type sequence C description BINDING SITE FOR RESIDUE ZN I 204 source : AC6 7) chain I residue 103 type sequence C description BINDING SITE FOR RESIDUE ZN I 204 source : AC6 8) chain I residue 106 type sequence C description BINDING SITE FOR RESIDUE ZN I 204 source : AC6 9) chain I residue 75-110 type prosite sequence CPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF description ZF_TFIIS_1 Zinc finger TFIIS-type signature. CpkChsrenvffqSQQRRkDTSmvlffvCls...CshiF source prosite : PS00466 10) chain I residue 6-32 type prosite sequence FCRDCNNMLYPREDKENNRLLFECRTC description RNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCRDCNNMLypredkennrllfeCrtC source prosite : PS01030 11) chain I residue 7-32 type ZN_FING sequence CRDCNNMLYPREDKENNRLLFECRTC description C4-type => ECO:0000255 source Swiss-Prot : SWS_FT_FI1 12) chain I residue 71-111 type ZN_FING sequence SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF T description TFIIS-type => ECO:0000255|PROSITE-ProRule:PRU00472 source Swiss-Prot : SWS_FT_FI2 13) chain I residue 7 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU10145, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI3 14) chain I residue 10 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU10145, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI3 15) chain I residue 29 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU10145, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI3 16) chain I residue 32 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU10145, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI3 17) chain I residue 75 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI4 18) chain I residue 78 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI4 19) chain I residue 103 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI4 20) chain I residue 106 type BINDING sequence C description BINDING => ECO:0000255|PROSITE-ProRule:PRU00472, ECO:0000269|PubMed:11313498, ECO:0000269|PubMed:11805306, ECO:0000269|PubMed:15537538, ECO:0000305|PubMed:11313499 source Swiss-Prot : SWS_FT_FI4 21) chain I residue 40 type MOD_RES sequence S description Phosphoserine => ECO:0007744|PubMed:18407956 source Swiss-Prot : SWS_FT_FI5

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