|
eF-site ID
|
3gtg-C |
PDB Code
|
3gtg |
Chain
|
C |
|
click to enlarge
|
|
Title
|
Backtracked RNA polymerase II complex with 12mer RNA |
Classification
|
TRANSCRIPTION, TRANSFERASE/DNA/RNA HYBRID |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
|
ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
|
Sequence
|
C: |
SEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEI
PTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLE
YSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIV
SNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKK
GIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEW
PQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVD
QVVVRGIDTLQKKVASILLALTQMDQDKVNF
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
C |
residue |
86 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN C 319
|
source |
: AC4
|
|
2)
|
chain |
C |
residue |
88 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN C 319
|
source |
: AC4
|
|
3)
|
chain |
C |
residue |
92 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN C 319
|
source |
: AC4
|
|
4)
|
chain |
C |
residue |
95 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN C 319
|
source |
: AC4
|
|
5)
|
chain |
C |
residue |
31-71 |
type |
prosite |
sequence |
NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
|
description |
RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
|
source |
prosite : PS00446
|
|
6)
|
chain |
C |
residue |
88 |
type |
ZN_FING |
sequence |
C
|
description |
C4-type => ECO:0000255
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
7)
|
chain |
C |
residue |
92 |
type |
ZN_FING |
sequence |
C
|
description |
C4-type => ECO:0000255
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
8)
|
chain |
C |
residue |
95 |
type |
ZN_FING |
sequence |
C
|
description |
C4-type => ECO:0000255
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|