eF-site ID 3gtg-C
PDB Code 3gtg
Chain C

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Title Backtracked RNA polymerase II complex with 12mer RNA
Classification TRANSCRIPTION, TRANSFERASE/DNA/RNA HYBRID
Compound DNA-directed RNA polymerase II subunit RPB1
Source ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence C:  SEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEI
PTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLE
YSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIV
SNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKK
GIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEW
PQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVD
QVVVRGIDTLQKKVASILLALTQMDQDKVNF
Description


Functional site

1) chain C
residue 86
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 319
source : AC4

2) chain C
residue 88
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 319
source : AC4

3) chain C
residue 92
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 319
source : AC4

4) chain C
residue 95
type
sequence C
description BINDING SITE FOR RESIDUE ZN C 319
source : AC4

5) chain C
residue 31-71
type prosite
sequence NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
description RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
source prosite : PS00446

6) chain C
residue 88
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

7) chain C
residue 92
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

8) chain C
residue 95
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1


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