eF-site ID 3gtg-A
PDB Code 3gtg
Chain A

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Title Backtracked RNA polymerase II complex with 12mer RNA
Classification TRANSCRIPTION, TRANSFERASE/DNA/RNA HYBRID
Compound DNA-directed RNA polymerase II subunit RPB1
Source ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae;
Sequence A:  GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMD
ETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFG
HIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM
RQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLV
SRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVL
STEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVP
PPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHN
GAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPV
KSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELD
QVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA
KYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPV
LFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADF
DGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMG
IVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPT
PAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKD
NGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVC
AKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITET
IAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFL
NEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMS
ACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVEN
SYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV
KALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQS
LDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGD
LKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRR
IIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRG
KNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAF
DWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLN
TFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEP
GHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTV
IPEDEEIIQLHFSLLDEQQSPWLLRLELDRAAMNDKDLTM
GQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLD
AETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDR
KVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYT
NSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMA
LLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEIL
FEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEES
LV
Description


Functional site

1) chain A
residue 107
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1734
source : AC1

2) chain A
residue 110
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1734
source : AC1

3) chain A
residue 148
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1734
source : AC1

4) chain A
residue 167
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1734
source : AC1

5) chain A
residue 67
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1735
source : AC2

6) chain A
residue 68
type
sequence Q
description BINDING SITE FOR RESIDUE ZN A 1735
source : AC2

7) chain A
residue 70
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1735
source : AC2

8) chain A
residue 77
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1735
source : AC2

9) chain A
residue 80
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 1735
source : AC2

10) chain A
residue 481
type
sequence D
description BINDING SITE FOR RESIDUE MG A 1736
source : AC9

11) chain A
residue 483
type
sequence D
description BINDING SITE FOR RESIDUE MG A 1736
source : AC9

12) chain A
residue 485
type
sequence D
description BINDING SITE FOR RESIDUE MG A 1736
source : AC9

13) chain A
residue 483
type catalytic
sequence D
description 788
source MCSA : MCSA1

14) chain A
residue 485
type catalytic
sequence D
description 788
source MCSA : MCSA1

15) chain A
residue 1085
type catalytic
sequence H
description 788
source MCSA : MCSA1

16) chain A
residue 483
type ZN_FING
sequence D
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 485
type ZN_FING
sequence D
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

18) chain A
residue 107
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

19) chain A
residue 110
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 148
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 167
type ZN_FING
sequence C
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 481
type ZN_FING
sequence D
description C4-type => ECO:0000255
source Swiss-Prot : SWS_FT_FI1


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