|
|
eF-site ID
|
3gtg-B |
|
PDB Code
|
3gtg |
|
Chain
|
B |
|
click to enlarge
|
|
|
Title
|
Backtracked RNA polymerase II complex with 12mer RNA |
|
Classification
|
TRANSCRIPTION, TRANSFERASE/DNA/RNA HYBRID |
|
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
|
Source
|
ORGANISM_COMMON: yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
|
|
Sequence
|
B: |
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTK
PMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKKVFIG
RLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGS
EKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGS
RFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRA
LGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRE
TALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLE
GFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDL
AGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAI
NAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTY
SSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACG
LVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQS
PDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVS
MIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVR
KGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYID
AEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHH
ATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMG
KQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKF
RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSL
FFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLD
DDGLIAPGVRVSGEDVIIGKTTPISSKRDASTPLRSTENG
IVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQK
GTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLI
ECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSR
GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA
RGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFL
KERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDN
KIDIYQIHIPYAAKLLFQELMAMNITPRLYTDR
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
B |
| residue |
1163 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN B 1307
|
| source |
: AC3
|
|
|
2)
|
chain |
B |
| residue |
1166 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN B 1307
|
| source |
: AC3
|
|
|
3)
|
chain |
B |
| residue |
1182 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN B 1307
|
| source |
: AC3
|
|
|
4)
|
chain |
B |
| residue |
1185 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN B 1307
|
| source |
: AC3
|
|
|
5)
|
chain |
B |
| residue |
977-989 |
| type |
prosite |
| sequence |
GDKFASRHGQKGT
|
| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
| source |
prosite : PS01166
|
|
|
6)
|
chain |
B |
| residue |
837 |
| type |
catalytic |
| sequence |
D
|
| description |
788
|
| source |
MCSA : MCSA1
|
|
|
7)
|
chain |
B |
| residue |
1185 |
| type |
BINDING |
| sequence |
C
|
| description |
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
|