eF-site ID 3gp9-D PDB Code 3gp9 Chain D click to enlarge Title Crystal structure of the Mimivirus NDK complexed with GDP Classification TRANSFERASE Compound Nucleoside diphosphate kinase Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV) Sequence D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFPE Description Functional site 1) chain D residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 2) chain D residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 3) chain D residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 4) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 5) chain D residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 6) chain D residue 109 type sequence N description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 7) chain D residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 8) chain D residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 9) chain D residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 10) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 11) chain D residue 106 type sequence I description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 12) chain D residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 13) chain D residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG D 140 source : BC3 14) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE MG D 140 source : BC3 15) chain D residue 112 type sequence H description BINDING SITE FOR RESIDUE MG D 140 source : BC3 16) chain D residue 113 type sequence A description BINDING SITE FOR RESIDUE MG D 140 source : BC3 17) chain D residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 19) chain D residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 20) chain D residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 21) chain D residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 22) chain D residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2

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