eF-site ID 3gp9-BDF PDB Code 3gp9 Chain B, D, F click to enlarge Title Crystal structure of the Mimivirus NDK complexed with GDP Classification TRANSFERASE Compound Nucleoside diphosphate kinase Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV) Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK APRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA VDEISIWFPE D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFPE F:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFP Description Functional site 1) chain B residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 2) chain B residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 3) chain B residue 53 type sequence H description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 4) chain B residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 5) chain B residue 62 type sequence N description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 6) chain B residue 86 type sequence R description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 7) chain B residue 89 type sequence Q description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 8) chain B residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 9) chain B residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 10) chain B residue 107 type sequence R description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 11) chain B residue 109 type sequence N description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 12) chain B residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP B 138 source : AC4 13) chain B residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 B 139 source : AC5 14) chain B residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 B 139 source : AC5 15) chain B residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 B 139 source : AC5 16) chain B residue 105 type sequence D description BINDING SITE FOR RESIDUE PO4 B 139 source : AC5 17) chain B residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 B 139 source : AC5 18) chain B residue 86 type sequence R description BINDING SITE FOR RESIDUE MG B 140 source : AC6 19) chain B residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG B 140 source : AC6 20) chain B residue 112 type sequence H description BINDING SITE FOR RESIDUE MG B 140 source : AC6 21) chain B residue 113 type sequence A description BINDING SITE FOR RESIDUE MG B 140 source : AC6 22) chain D residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 23) chain D residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 24) chain D residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 25) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 26) chain D residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 27) chain D residue 109 type sequence N description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 28) chain D residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP D 138 source : BC1 29) chain D residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 30) chain D residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 31) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 32) chain D residue 106 type sequence I description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 33) chain D residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 D 139 source : BC2 34) chain D residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG D 140 source : BC3 35) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE MG D 140 source : BC3 36) chain D residue 112 type sequence H description BINDING SITE FOR RESIDUE MG D 140 source : BC3 37) chain D residue 113 type sequence A description BINDING SITE FOR RESIDUE MG D 140 source : BC3 38) chain F residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 39) chain F residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 40) chain F residue 53 type sequence H description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 41) chain F residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 42) chain F residue 86 type sequence R description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 43) chain F residue 89 type sequence Q description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 44) chain F residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 45) chain F residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 46) chain F residue 107 type sequence R description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 47) chain F residue 109 type sequence N description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 48) chain F residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP F 138 source : BC7 49) chain F residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 F 139 source : BC8 50) chain F residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 F 139 source : BC8 51) chain F residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 F 139 source : BC8 52) chain F residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 F 139 source : BC8 53) chain F residue 86 type sequence R description BINDING SITE FOR RESIDUE MG F 140 source : BC9 54) chain F residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG F 140 source : BC9 55) chain F residue 112 type sequence H description BINDING SITE FOR RESIDUE MG F 140 source : BC9 56) chain F residue 113 type sequence A description BINDING SITE FOR RESIDUE MG F 140 source : BC9 57) chain B residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 58) chain D residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 59) chain F residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 60) chain B residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 61) chain D residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 62) chain D residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 63) chain D residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 64) chain D residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 65) chain D residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 66) chain F residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 67) chain F residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 68) chain F residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 69) chain F residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 70) chain F residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 71) chain B residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 72) chain B residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 73) chain B residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 74) chain B residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2

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