eF-site ID 3gp9-ACE PDB Code 3gp9 Chain A, C, E click to enlarge Title Crystal structure of the Mimivirus NDK complexed with GDP Classification TRANSFERASE Compound Nucleoside diphosphate kinase Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV) Sequence A:  AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFW SKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG TDAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSED SAVDEISIWFPET C:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFPET E:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFPET Description Functional site 1) chain A residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 2) chain A residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 3) chain A residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 4) chain A residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 5) chain A residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 6) chain A residue 107 type sequence R description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 7) chain A residue 109 type sequence N description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 8) chain A residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP A 138 source : AC1 9) chain A residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 A 139 source : AC2 10) chain A residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 A 139 source : AC2 11) chain A residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 A 139 source : AC2 12) chain A residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 A 139 source : AC2 13) chain A residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG A 140 source : AC3 14) chain A residue 112 type sequence H description BINDING SITE FOR RESIDUE MG A 140 source : AC3 15) chain A residue 113 type sequence A description BINDING SITE FOR RESIDUE MG A 140 source : AC3 16) chain C residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 17) chain C residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 18) chain C residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 19) chain C residue 86 type sequence R description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 20) chain C residue 89 type sequence Q description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 21) chain C residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 22) chain C residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 23) chain C residue 107 type sequence R description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 24) chain C residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP C 138 source : AC7 25) chain C residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 C 139 source : AC8 26) chain C residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 C 139 source : AC8 27) chain C residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 C 139 source : AC8 28) chain C residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 C 139 source : AC8 29) chain C residue 86 type sequence R description BINDING SITE FOR RESIDUE MG C 140 source : AC9 30) chain C residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG C 140 source : AC9 31) chain C residue 112 type sequence H description BINDING SITE FOR RESIDUE MG C 140 source : AC9 32) chain C residue 113 type sequence A description BINDING SITE FOR RESIDUE MG C 140 source : AC9 33) chain E residue 9 type sequence K description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 34) chain E residue 50 type sequence Y description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 35) chain E residue 53 type sequence H description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 36) chain E residue 58 type sequence Y description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 37) chain E residue 62 type sequence N description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 38) chain E residue 86 type sequence R description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 39) chain E residue 99 type sequence R description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 40) chain E residue 106 type sequence I description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 41) chain E residue 107 type sequence R description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 42) chain E residue 109 type sequence N description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 43) chain E residue 112 type sequence H description BINDING SITE FOR RESIDUE GDP E 138 source : BC4 44) chain E residue 91 type sequence N description BINDING SITE FOR RESIDUE PO4 E 139 source : BC5 45) chain E residue 92 type sequence I description BINDING SITE FOR RESIDUE PO4 E 139 source : BC5 46) chain E residue 99 type sequence R description BINDING SITE FOR RESIDUE PO4 E 139 source : BC5 47) chain E residue 109 type sequence N description BINDING SITE FOR RESIDUE PO4 E 139 source : BC5 48) chain E residue 86 type sequence R description BINDING SITE FOR RESIDUE MG E 140 source : BC6 49) chain E residue 89 type sequence Q description BINDING SITE FOR RESIDUE MG E 140 source : BC6 50) chain E residue 99 type sequence R description BINDING SITE FOR RESIDUE MG E 140 source : BC6 51) chain E residue 112 type sequence H description BINDING SITE FOR RESIDUE MG E 140 source : BC6 52) chain E residue 113 type sequence A description BINDING SITE FOR RESIDUE MG E 140 source : BC6 53) chain A residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 54) chain C residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 55) chain E residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 56) chain A residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 57) chain C residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 58) chain C residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 59) chain C residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 60) chain C residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 61) chain C residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 62) chain A residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 63) chain E residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 64) chain E residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 65) chain E residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 66) chain E residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 67) chain E residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 68) chain A residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 69) chain A residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 70) chain A residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 71) chain A residue 109-117 type prosite sequence NLIHASDSE description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE source prosite : PS00469

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