eF-site ID 3fc9-ABF
PDB Code 3fc9
Chain A, B, F

click to enlarge
Title Crystal structure of the Mimivirus NDK +Kpn-N62L double mutant complexed with CDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence A:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS
EDSAVDEISIWFPE
B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS
EDSAVDEISIWFP
F:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS
EDSAVDEISIWFP
Description


Functional site

1) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

2) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

3) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

4) chain A
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

5) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

6) chain A
residue 92
type
sequence T
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

7) chain A
residue 103
type
sequence R
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

8) chain A
residue 110
type
sequence I
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

9) chain A
residue 111
type
sequence R
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

10) chain A
residue 113
type
sequence N
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

11) chain A
residue 119
type
sequence D
description BINDING SITE FOR RESIDUE CTP A 142
source : AC1

12) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

13) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

14) chain B
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

15) chain B
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

16) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

17) chain B
residue 92
type
sequence T
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

18) chain B
residue 103
type
sequence R
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

19) chain B
residue 110
type
sequence I
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

20) chain B
residue 111
type
sequence R
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

21) chain B
residue 113
type
sequence N
description BINDING SITE FOR RESIDUE CDP B 143
source : AC3

22) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG F 142
source : BC1

23) chain F
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

24) chain F
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

25) chain F
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

26) chain F
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

27) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

28) chain F
residue 92
type
sequence T
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

29) chain F
residue 103
type
sequence R
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

30) chain F
residue 110
type
sequence I
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

31) chain F
residue 111
type
sequence R
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

32) chain F
residue 113
type
sequence N
description BINDING SITE FOR RESIDUE CDP F 143
source : BC2

33) chain A
residue 112
type ACT_SITE
sequence E
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

34) chain B
residue 112
type ACT_SITE
sequence E
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

35) chain F
residue 112
type ACT_SITE
sequence E
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

36) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

37) chain B
residue 109
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

38) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

39) chain F
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

40) chain F
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

41) chain F
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

42) chain F
residue 99
type BINDING
sequence P
description
source Swiss-Prot : SWS_FT_FI2

43) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

44) chain F
residue 109
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

45) chain A
residue 99
type BINDING
sequence P
description
source Swiss-Prot : SWS_FT_FI2

46) chain A
residue 109
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

47) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

48) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

49) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

50) chain B
residue 99
type BINDING
sequence P
description
source Swiss-Prot : SWS_FT_FI2

51) chain A
residue 113-121
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469


Display surface

Download
Links