eF-site ID 3fbf-BDF
PDB Code 3fbf
Chain B, D, F

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Title Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA
VDEISIWFPE
D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFPET
F:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFP
Description


Functional site

1) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

2) chain B
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

3) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

4) chain B
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

5) chain B
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

6) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

7) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

8) chain B
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

9) chain B
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD B 138
source : AC4

10) chain D
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG D 163
source : AC7

11) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

12) chain D
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

13) chain D
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

14) chain D
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

15) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

16) chain D
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

17) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

18) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

19) chain D
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

20) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD D 138
source : AC8

21) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG F 165
source : BC2

22) chain F
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG F 165
source : BC2

23) chain F
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

24) chain F
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

25) chain F
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

26) chain F
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

27) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

28) chain F
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

29) chain F
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

30) chain F
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

31) chain F
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

32) chain F
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

33) chain B
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

34) chain D
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

35) chain F
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

36) chain B
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

37) chain D
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

38) chain D
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

39) chain D
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

40) chain D
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

41) chain D
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

42) chain F
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

43) chain F
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

44) chain F
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

45) chain F
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

46) chain F
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

47) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

48) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

49) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

50) chain B
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2


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