eF-site ID 3fbf-ACE
PDB Code 3fbf
Chain A, C, E

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Title Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence A:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA
VDEISIWFPE
C:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFPET
E:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFPET
Description


Functional site

1) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

2) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

3) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

4) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

5) chain A
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

6) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

7) chain A
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

8) chain A
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

9) chain A
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

10) chain A
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

11) chain A
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

12) chain C
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG C 162
source : AC5

13) chain C
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG C 162
source : AC5

14) chain C
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

15) chain C
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

16) chain C
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

17) chain C
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

18) chain C
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

19) chain C
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

20) chain C
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

21) chain C
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

22) chain C
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD C 138
source : AC6

23) chain E
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

24) chain E
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

25) chain E
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

26) chain E
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

27) chain E
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

28) chain E
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

29) chain E
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

30) chain E
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

31) chain E
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD E 138
source : BC1

32) chain A
residue 109-117
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469

33) chain A
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

34) chain C
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

35) chain E
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

36) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

37) chain C
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

38) chain C
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

39) chain C
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

40) chain C
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

41) chain C
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

42) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

43) chain E
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

44) chain E
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

45) chain E
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

46) chain E
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

47) chain E
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

48) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

49) chain A
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

50) chain A
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2


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