eF-site ID 3fbf-A
PDB Code 3fbf
Chain A

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Title Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence A:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA
VDEISIWFPE
Description


Functional site

1) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

2) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

3) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

4) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

5) chain A
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

6) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

7) chain A
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

8) chain A
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

9) chain A
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

10) chain A
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

11) chain A
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

12) chain A
residue 109-117
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469

13) chain A
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

15) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

17) chain A
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

18) chain A
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2


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