eF-site ID 3fbe-BDF
PDB Code 3fbe
Chain B, D, F

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Title Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source (NDK_MIMIV)
Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDSA
VDEISIWFP
D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPET
F:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFP
Description


Functional site

1) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

2) chain B
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

3) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

4) chain B
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

5) chain B
residue 90
type
sequence G
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

6) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

7) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE GDP B 138
source : AC3

8) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE MG D 163
source : AC6

9) chain D
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE MG D 163
source : AC6

10) chain D
residue 112
type
sequence H
description BINDING SITE FOR RESIDUE MG D 163
source : AC6

11) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

12) chain D
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

13) chain D
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

14) chain D
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

15) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

16) chain D
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

17) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

18) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

19) chain D
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

20) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE GDP D 138
source : AC7

21) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG F 165
source : BC1

22) chain F
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG F 165
source : BC1

23) chain F
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

24) chain F
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

25) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

26) chain F
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

27) chain F
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

28) chain F
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

29) chain F
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE GDP F 138
source : BC2

30) chain B
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

31) chain D
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

32) chain D
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

33) chain D
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

34) chain D
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

35) chain D
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

36) chain F
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

37) chain F
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

38) chain F
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

39) chain F
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

40) chain F
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

41) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

42) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

43) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

44) chain B
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

45) chain B
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

46) chain D
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

47) chain F
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1


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