eF-site ID 3fbe-ACE
PDB Code 3fbe
Chain A, C, E

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Title Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source (NDK_MIMIV)
Sequence A:  AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFW
SKAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEG
TDAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSED
SAVDEISIWFPET
C:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPET
E:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPET
Description


Functional site

1) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

2) chain A
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

3) chain A
residue 112
type
sequence H
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

4) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

5) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

6) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

7) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

8) chain A
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

9) chain A
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

10) chain A
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

11) chain A
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

12) chain A
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE GDP A 138
source : AC2

13) chain C
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG C 162
source : AC4

14) chain C
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

15) chain C
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

16) chain C
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

17) chain C
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

18) chain C
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

19) chain C
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

20) chain C
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

21) chain C
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE GDP C 138
source : AC5

22) chain E
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG E 164
source : AC8

23) chain E
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG E 164
source : AC8

24) chain E
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

25) chain E
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

26) chain E
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

27) chain E
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

28) chain E
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

29) chain E
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

30) chain E
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

31) chain E
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE GDP E 138
source : AC9

32) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

33) chain C
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

34) chain C
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

35) chain C
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

36) chain C
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

37) chain C
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

38) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

39) chain E
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

40) chain E
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

41) chain E
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

42) chain E
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

43) chain E
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

44) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

45) chain A
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

46) chain A
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

47) chain A
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

48) chain C
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

49) chain E
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

50) chain A
residue 109-117
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469


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