eF-site ID 3fbc-BDF
PDB Code 3fbc
Chain B, D, F

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Title Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source (NDK_MIMIV)
Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDSA
VDEISIWFPE
D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPE
F:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDSA
VDEISIWFP
Description


Functional site

1) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE MG B 161
source : AC4

2) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

3) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

4) chain B
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

5) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

6) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

7) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

8) chain B
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD B 138
source : AC5

9) chain B
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE PO4 B 139
source : AC6

10) chain B
residue 92
type
sequence I
description BINDING SITE FOR RESIDUE PO4 B 139
source : AC6

11) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE PO4 B 139
source : AC6

12) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE PO4 B 139
source : AC6

13) chain B
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE PO4 B 139
source : AC6

14) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG D 163
source : BC1

15) chain D
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG D 163
source : BC1

16) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

17) chain D
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

18) chain D
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

19) chain D
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

20) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

21) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

22) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

23) chain D
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

24) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD D 138
source : BC2

25) chain D
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE PO4 D 139
source : BC3

26) chain D
residue 92
type
sequence I
description BINDING SITE FOR RESIDUE PO4 D 139
source : BC3

27) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE PO4 D 139
source : BC3

28) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE PO4 D 139
source : BC3

29) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE PO4 D 139
source : BC3

30) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG F 165
source : BC7

31) chain F
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG F 165
source : BC7

32) chain F
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

33) chain F
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

34) chain F
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

35) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

36) chain F
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

37) chain F
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

38) chain F
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

39) chain F
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

40) chain F
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

41) chain F
residue 112
type
sequence H
description BINDING SITE FOR RESIDUE TYD F 138
source : BC8

42) chain F
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE PO4 F 139
source : BC9

43) chain F
residue 92
type
sequence I
description BINDING SITE FOR RESIDUE PO4 F 139
source : BC9

44) chain F
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE PO4 F 139
source : BC9

45) chain F
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE PO4 F 139
source : BC9

46) chain B
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

47) chain D
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

48) chain D
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

49) chain D
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

50) chain D
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

51) chain D
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

52) chain F
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

53) chain F
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

54) chain F
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

55) chain F
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

56) chain F
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

57) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

58) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

59) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

60) chain B
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

61) chain B
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

62) chain D
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

63) chain F
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1


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