eF-site ID 3fbc-ACE
PDB Code 3fbc
Chain A, C, E

click to enlarge
Title Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source (NDK_MIMIV)
Sequence A:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPE
C:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPET
E:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDSA
VDEISIWFPE
Description


Functional site

1) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

2) chain A
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG A 160
source : AC1

3) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

4) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

5) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

6) chain A
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

7) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

8) chain A
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

9) chain A
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

10) chain A
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

11) chain A
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD A 138
source : AC2

12) chain A
residue 90
type
sequence G
description BINDING SITE FOR RESIDUE PO4 A 139
source : AC3

13) chain A
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE PO4 A 139
source : AC3

14) chain A
residue 92
type
sequence I
description BINDING SITE FOR RESIDUE PO4 A 139
source : AC3

15) chain A
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE PO4 A 139
source : AC3

16) chain A
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE PO4 A 139
source : AC3

17) chain C
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG C 162
source : AC7

18) chain C
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG C 162
source : AC7

19) chain C
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

20) chain C
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

21) chain C
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

22) chain C
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

23) chain C
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

24) chain C
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

25) chain C
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

26) chain C
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

27) chain C
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD C 138
source : AC8

28) chain C
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE PO4 C 139
source : AC9

29) chain C
residue 92
type
sequence I
description BINDING SITE FOR RESIDUE PO4 C 139
source : AC9

30) chain C
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE PO4 C 139
source : AC9

31) chain C
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE PO4 C 139
source : AC9

32) chain C
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE PO4 C 139
source : AC9

33) chain E
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG E 164
source : BC4

34) chain E
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG E 164
source : BC4

35) chain E
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

36) chain E
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

37) chain E
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

38) chain E
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

39) chain E
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

40) chain E
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

41) chain E
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

42) chain E
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

43) chain E
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD E 138
source : BC5

44) chain E
residue 91
type
sequence N
description BINDING SITE FOR RESIDUE PO4 E 139
source : BC6

45) chain E
residue 92
type
sequence I
description BINDING SITE FOR RESIDUE PO4 E 139
source : BC6

46) chain E
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE PO4 E 139
source : BC6

47) chain E
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE PO4 E 139
source : BC6

48) chain A
residue 109-117
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469

49) chain A
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

50) chain C
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

51) chain E
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

52) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

53) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

54) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

55) chain A
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

56) chain A
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

57) chain C
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

58) chain C
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

59) chain C
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

60) chain C
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

61) chain C
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

62) chain E
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

63) chain E
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

64) chain E
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

65) chain E
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

66) chain E
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2


Display surface

Download
Links