eF-site ID 3evw-BDF
PDB Code 3evw
Chain B, D, F

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Title Crystal structure of the Mimivirus NDK R107G mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source null (NDK_MIMIV)
Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDSA
VDEISIWFPE
D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFPET
F:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIGENLIHASDSEDS
AVDEISIWFP
Description


Functional site

1) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG B 161
source : AC2

2) chain B
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG B 161
source : AC2

3) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG D 163
source : AC4

4) chain D
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG D 163
source : AC4

5) chain F
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG F 165
source : AC6

6) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

7) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

8) chain B
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

9) chain B
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

10) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

11) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

12) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

13) chain B
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

14) chain B
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD B 138
source : AC8

15) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

16) chain D
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

17) chain D
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

18) chain D
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

19) chain D
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

20) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

21) chain D
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

22) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

23) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

24) chain D
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

25) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD D 138
source : BC1

26) chain F
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

27) chain F
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

28) chain F
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

29) chain F
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

30) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

31) chain F
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

32) chain F
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

33) chain F
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

34) chain F
residue 107
type
sequence G
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

35) chain F
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE TYD F 138
source : BC3

36) chain B
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

37) chain D
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

38) chain F
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

39) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

40) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

41) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

42) chain B
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

43) chain B
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

44) chain D
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

45) chain D
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

46) chain D
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

47) chain D
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

48) chain D
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

49) chain F
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

50) chain F
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

51) chain F
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

52) chain F
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

53) chain F
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2


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