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eF-site ID
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3eql-C |
PDB Code
|
3eql |
Chain
|
C |
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click to enlarge
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Title
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Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxopyronin |
Classification
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TRANSFERASE |
Compound
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DNA-directed RNA polymerase subunit alpha |
Source
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ORGANISM_SCIENTIFIC: Thermus thermophilus; |
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Sequence
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C: |
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQ
DECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIA
SIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVL
GYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT
LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEK
LGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGH
EVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERML
MGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNP
LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICP
VETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT
DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGE
PVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALM
GSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED
GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQR
PRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFD
GYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE
RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTS
FKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV
VRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLA
NRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRM
NLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQ
AFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPE
EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHM
VEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPS
VPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR
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Description
|
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Functional site
|
|
1)
|
chain |
C |
residue |
1034 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MXP D1527
|
source |
: AC3
|
|
2)
|
chain |
C |
residue |
1038 |
type |
|
sequence |
W
|
description |
BINDING SITE FOR RESIDUE MXP D1527
|
source |
: AC3
|
|
3)
|
chain |
C |
residue |
1041 |
type |
|
sequence |
E
|
description |
BINDING SITE FOR RESIDUE MXP D1527
|
source |
: AC3
|
|
4)
|
chain |
C |
residue |
1084 |
type |
|
sequence |
S
|
description |
BINDING SITE FOR RESIDUE MXP D1527
|
source |
: AC3
|
|
5)
|
chain |
C |
residue |
1088 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE MXP D1527
|
source |
: AC3
|
|
6)
|
chain |
C |
residue |
836-848 |
type |
prosite |
sequence |
GDKLANRHGNKGV
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
|
source |
prosite : PS01166
|
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