eF-site ID 3emt-AB
PDB Code 3emt
Chain A, B

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Title Crystal structure of the mimivirus NDK +Kpn-R107G double mutant complexed with dGDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence A:  QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKA
PRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDA
ISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDSE
DSAVDEISIWFPE
B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD
AISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDS
EDSAVDEISIWFP
Description


Functional site

1) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

2) chain A
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

3) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

4) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

5) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

6) chain A
residue 92
type
sequence T
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

7) chain A
residue 103
type
sequence R
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

8) chain A
residue 110
type
sequence I
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

9) chain A
residue 113
type
sequence N
description BINDING SITE FOR RESIDUE DGI A 201
source : AC2

10) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

11) chain B
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

12) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

13) chain B
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

14) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

15) chain B
residue 92
type
sequence T
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

16) chain B
residue 103
type
sequence R
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

17) chain B
residue 110
type
sequence I
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

18) chain B
residue 113
type
sequence N
description BINDING SITE FOR RESIDUE DGI B 201
source : AC4

19) chain A
residue 113-121
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469

20) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

21) chain B
residue 109
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

22) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

23) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

24) chain A
residue 103
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

25) chain A
residue 113
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

26) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

27) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

28) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

29) chain B
residue 99
type BINDING
sequence P
description
source Swiss-Prot : SWS_FT_FI2

30) chain A
residue 116
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

31) chain B
residue 112
type ACT_SITE
sequence E
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1


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