eF-site ID 3em1-A
PDB Code 3em1
Chain A

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Title Crystal structure of the mimivirus NDK +Kpn-N62L double mutant complexed with dTDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence A:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTD
AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS
EDSAVDEISIWFP
Description


Functional site

1) chain A
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

2) chain A
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

3) chain A
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

4) chain A
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

5) chain A
residue 62
type
sequence L
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

6) chain A
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

7) chain A
residue 92
type
sequence T
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

8) chain A
residue 103
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

9) chain A
residue 110
type
sequence I
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

10) chain A
residue 111
type
sequence R
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

11) chain A
residue 113
type
sequence N
description BINDING SITE FOR RESIDUE TYD A 143
source : AC2

12) chain A
residue 113-121
type prosite
sequence NLIHASDSE
description NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NliHASDSE
source prosite : PS00469

13) chain A
residue 112
type ACT_SITE
sequence E
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

15) chain A
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

17) chain A
residue 99
type BINDING
sequence P
description
source Swiss-Prot : SWS_FT_FI2

18) chain A
residue 109
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2


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