eF-site ID 3elh-BDF
PDB Code 3elh
Chain B, D, F

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Title X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with dUDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source (NDK_MIMIV)
Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA
VDEISIWFPE
D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFPET
F:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFP
Description


Functional site

1) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

2) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

3) chain B
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

4) chain B
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

5) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

6) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

7) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

8) chain B
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

9) chain B
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE DUD B 161
source : AC3

10) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

11) chain D
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

12) chain D
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

13) chain D
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

14) chain D
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

15) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

16) chain D
residue 89
type
sequence Q
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

17) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

18) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

19) chain D
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

20) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE DUD D 163
source : AC7

21) chain D
residue 115
type
sequence D
description BINDING SITE FOR RESIDUE MG D 164
source : AC8

22) chain F
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

23) chain F
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

24) chain F
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

25) chain F
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

26) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

27) chain F
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

28) chain F
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

29) chain F
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

30) chain F
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE DUD F 165
source : BC2

31) chain F
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG F 166
source : BC3

32) chain B
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

33) chain D
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

34) chain F
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

35) chain B
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

36) chain D
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

37) chain D
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

38) chain D
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

39) chain D
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

40) chain D
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

41) chain F
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

42) chain F
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

43) chain F
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

44) chain F
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

45) chain F
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

46) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

47) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

48) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

49) chain B
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2


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