eF-site ID 3eic-B
PDB Code 3eic
Chain B

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Title X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with UDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK
APRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD
AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA
VDEISIWFPE
Description


Functional site

1) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG B 161
source : AC2

2) chain B
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

3) chain B
residue 50
type
sequence Y
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

4) chain B
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

5) chain B
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

6) chain B
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

7) chain B
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

8) chain B
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

9) chain B
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

10) chain B
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

11) chain B
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE UDP B 162
source : AC8

12) chain B
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

13) chain B
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2

14) chain B
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

15) chain B
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

16) chain B
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

17) chain B
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2


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