eF-site ID 3e3n-D
PDB Code 3e3n
Chain D

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Title The Glycogen phosphorylase b R state- AMP complex
Classification TRANSFERASE
Compound Glycogen phosphorylase, muscle form
Source ORGANISM_COMMON: European rabbit,Japanese white rabbit,domestic rabbit,rabbits; ORGANISM_SCIENTIFIC: Oryctolagus cuniculus;
Sequence D:  QEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVA
TPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLS
LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIE
EDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIF
NQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV
EHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSA
KAPNGYIQAVLDRNLAENISRVLYGKELRLKQEYFVVAAT
LQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPS
LAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEA
LERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVD
RLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEIL
KKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII
AERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKL
KFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHV
ITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLI
TAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLS
EQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAEEA
GEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIE
QLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEEYVKC
QERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYARE
IWGVEPSRQRLPAPD
Description


Functional site

1) chain D
residue 42
type
sequence D
description BINDING SITE FOR RESIDUE AMP C 843
source : AC7

2) chain D
residue 44
type
sequence N
description BINDING SITE FOR RESIDUE AMP C 843
source : AC7

3) chain D
residue 45
type
sequence V
description BINDING SITE FOR RESIDUE AMP C 843
source : AC7

4) chain D
residue 14
type
sequence S
description BINDING SITE FOR RESIDUE SO4 C 845
source : AC9

5) chain D
residue 16
type
sequence R
description BINDING SITE FOR RESIDUE SO4 C 845
source : AC9

6) chain D
residue 69
type
sequence R
description BINDING SITE FOR RESIDUE SO4 C 845
source : AC9

7) chain D
residue 67
type
sequence W
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

8) chain D
residue 71
type
sequence Q
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

9) chain D
residue 75
type
sequence Y
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

10) chain D
residue 309
type
sequence R
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

11) chain D
residue 310
type
sequence R
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

12) chain D
residue 315
type
sequence K
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

13) chain D
residue 317
type
sequence G
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

14) chain D
residue 318
type
sequence C
description BINDING SITE FOR RESIDUE AMP D 843
source : BC1

15) chain D
residue 43
type
sequence R
description BINDING SITE FOR RESIDUE SO4 D 844
source : BC2

16) chain D
residue 135
type
sequence G
description BINDING SITE FOR RESIDUE SO4 D 845
source : BC3

17) chain D
residue 569
type
sequence R
description BINDING SITE FOR RESIDUE SO4 D 845
source : BC3

18) chain D
residue 574
type
sequence K
description BINDING SITE FOR RESIDUE SO4 D 845
source : BC3

19) chain D
residue 680
type
sequence X
description BINDING SITE FOR RESIDUE SO4 D 845
source : BC3

20) chain D
residue 513
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P09812
source Swiss-Prot : SWS_FT_FI10

21) chain D
residue 746
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P09812
source Swiss-Prot : SWS_FT_FI10

22) chain D
residue 747
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P09812
source Swiss-Prot : SWS_FT_FI10

23) chain D
residue 680
type MOD_RES
sequence X
description N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:7500360, ECO:0000269|PubMed:8976550, ECO:0007744|PDB:2PRI, ECO:0007744|PDB:2SKC, ECO:0007744|PDB:2SKD, ECO:0007744|PDB:2SKE
source Swiss-Prot : SWS_FT_FI11

24) chain D
residue 42
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:P11217
source Swiss-Prot : SWS_FT_FI1

25) chain D
residue 309
type BINDING
sequence R
description BINDING => ECO:0000250|UniProtKB:P11217
source Swiss-Prot : SWS_FT_FI1

26) chain D
residue 75
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:3616621
source Swiss-Prot : SWS_FT_FI2

27) chain D
residue 108
type SITE
sequence C
description Involved in the association of subunits => ECO:0000303|PubMed:728424
source Swiss-Prot : SWS_FT_FI3

28) chain D
residue 142
type SITE
sequence C
description Involved in the association of subunits => ECO:0000303|PubMed:728424
source Swiss-Prot : SWS_FT_FI3

29) chain D
residue 155
type SITE
sequence Y
description Can be labeled by an AMP analog; may be involved in allosteric regulation => ECO:0000303|PubMed:728424
source Swiss-Prot : SWS_FT_FI4

30) chain D
residue 14
type MOD_RES
sequence S
description Phosphoserine; by PHK; in form phosphorylase A => ECO:0000250|UniProtKB:P11217
source Swiss-Prot : SWS_FT_FI6

31) chain D
residue 203
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P09812
source Swiss-Prot : SWS_FT_FI7

32) chain D
residue 226
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:P09812
source Swiss-Prot : SWS_FT_FI7

33) chain D
residue 429
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:Q9WUB3
source Swiss-Prot : SWS_FT_FI8

34) chain D
residue 472
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0000250|UniProtKB:Q9WUB3
source Swiss-Prot : SWS_FT_FI9

35) chain D
residue 377
type catalytic
sequence H
description 205
source MCSA : MCSA4

36) chain D
residue 568
type catalytic
sequence K
description 205
source MCSA : MCSA4

37) chain D
residue 569
type catalytic
sequence R
description 205
source MCSA : MCSA4

38) chain D
residue 574
type catalytic
sequence K
description 205
source MCSA : MCSA4

39) chain D
residue 676
type catalytic
sequence T
description 205
source MCSA : MCSA4

40) chain D
residue 680
type catalytic
sequence X
description 205
source MCSA : MCSA4


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