eF-site ID 3e0d-ABCDEF PDB Code 3e0d Chain A, B, C, D, E, F click to enlarge Title Insights into the Replisome from the Crystral Structure of the Ternary Complex of the Eubacterial DNA Polymerase III alpha-subunit Classification TRANSFERASE/DNA Compound DNA substrate template strand Source null (3E0D) Sequence A:  LKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAM TDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRK RGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDR EILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNED LSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVA TNNGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEF YVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGD KMVYRIPRFPLGRTEAQYLRELTFLGLLRRYPDRITEAFY REVLRLLDERALAEALARVEEKAWEELRKREWTAEAILHR ALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGS AAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDT DFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKD VARVYGIPHKKAEELAKLIPVQFGKPKPLQEAFEAEPELR AEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPL TDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLT FLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKG VFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIP TYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQ IMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVR GAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSY QTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGI PVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAIL EERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDA FGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPP LVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVAS CTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALE VVKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVD HALLDEKGARLKSLLDEHPGSLPVYLRVLGPFGEALFALR EVRVGEEALGLLEAEGYRAYLVPDREVF B:  LKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAM TDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRK RGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDR EILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNED LSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVA TNNGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEF YVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGD KMVYRIPRFPLGRTEAQYLRELTFLGLLRRYPDRITEAFY REVLRLLDERALAEALARVEEKAWEELRKREWTAEAILHR ALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGS AAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDT DFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKD VARVYGIPHKKAEELAKLIPVQFGKPKPLQEAFEAEPELR AEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPL TDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLT FLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKG VFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIP TYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQ IMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVR GAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSY QTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGI PVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAIL EERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDA FGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPP LVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVAS CTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALE VVKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVD HALLDEKGARLKSLLDEHPGSLPVYLRVLGPFGEALFALR EVRVGEEALGLLEAEGYRAYLVPDREVF C:  TGTGGCACTGGCCGTCGTTT D:  AAACGACGGCCAGTGCCAX E:  TGTGGCACTGGCCGTCGTTT F:  AAACGACGGCCAGTGCCAX Description Functional site 1) chain A residue 463 type sequence D description BINDING SITE FOR RESIDUE CA A 1221 source : AC1 2) chain B residue 463 type sequence D description BINDING SITE FOR RESIDUE CA B 1221 source : AC2 3) chain B residue 465 type sequence D description BINDING SITE FOR RESIDUE CA B 1221 source : AC2 4) chain A residue 424 type sequence R description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 5) chain A residue 425 type sequence G description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 6) chain A residue 426 type sequence S description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 7) chain A residue 452 type sequence R description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 8) chain A residue 465 type sequence D description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 9) chain A residue 817 type sequence H description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 10) chain C residue 6 type sequence T description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 11) chain C residue 7 type sequence G description BINDING SITE FOR RESIDUE DTP A 1222 source : AC3 12) chain B residue 424 type sequence R description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4 13) chain B residue 425 type sequence G description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4 14) chain B residue 426 type sequence S description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4 15) chain B residue 465 type sequence D description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4 16) chain B residue 817 type sequence H description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4 17) chain E residue 6 type sequence T description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4 18) chain E residue 7 type sequence G description BINDING SITE FOR RESIDUE DTP B 1222 source : AC4

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