eF-site ID 3e0d-AB
PDB Code 3e0d
Chain A, B

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Title Insights into the Replisome from the Crystral Structure of the Ternary Complex of the Eubacterial DNA Polymerase III alpha-subunit
Classification TRANSFERASE/DNA
Compound DNA substrate template strand
Source Thermus aquaticus (3E0D)
Sequence A:  LKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAM
TDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRK
RGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDR
EILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNED
LSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVA
TNNGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEF
YVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGD
KMVYRIPRFPLGRTEAQYLRELTFLGLLRRYPDRITEAFY
REVLRLLDERALAEALARVEEKAWEELRKREWTAEAILHR
ALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGS
AAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDT
DFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKD
VARVYGIPHKKAEELAKLIPVQFGKPKPLQEAFEAEPELR
AEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPL
TDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLT
FLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKG
VFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIP
TYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQ
IMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVR
GAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSY
QTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGI
PVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAIL
EERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDA
FGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPP
LVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVAS
CTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALE
VVKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVD
HALLDEKGARLKSLLDEHPGSLPVYLRVLGPFGEALFALR
EVRVGEEALGLLEAEGYRAYLVPDREVF
B:  LKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAM
TDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRK
RGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDR
EILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNED
LSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVA
TNNGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEF
YVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGD
KMVYRIPRFPLGRTEAQYLRELTFLGLLRRYPDRITEAFY
REVLRLLDERALAEALARVEEKAWEELRKREWTAEAILHR
ALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGS
AAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDT
DFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKD
VARVYGIPHKKAEELAKLIPVQFGKPKPLQEAFEAEPELR
AEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPL
TDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLT
FLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKG
VFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIP
TYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQ
IMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVR
GAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSY
QTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGI
PVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAIL
EERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDA
FGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPP
LVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVAS
CTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALE
VVKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVD
HALLDEKGARLKSLLDEHPGSLPVYLRVLGPFGEALFALR
EVRVGEEALGLLEAEGYRAYLVPDREVF
Description


Functional site

1) chain A
residue 463
type
sequence D
description BINDING SITE FOR RESIDUE CA A 1221
source : AC1

2) chain B
residue 463
type
sequence D
description BINDING SITE FOR RESIDUE CA B 1221
source : AC2

3) chain B
residue 465
type
sequence D
description BINDING SITE FOR RESIDUE CA B 1221
source : AC2

4) chain A
residue 424
type
sequence R
description BINDING SITE FOR RESIDUE DTP A 1222
source : AC3

5) chain A
residue 425
type
sequence G
description BINDING SITE FOR RESIDUE DTP A 1222
source : AC3

6) chain A
residue 426
type
sequence S
description BINDING SITE FOR RESIDUE DTP A 1222
source : AC3

7) chain A
residue 452
type
sequence R
description BINDING SITE FOR RESIDUE DTP A 1222
source : AC3

8) chain A
residue 465
type
sequence D
description BINDING SITE FOR RESIDUE DTP A 1222
source : AC3

9) chain A
residue 817
type
sequence H
description BINDING SITE FOR RESIDUE DTP A 1222
source : AC3

10) chain B
residue 424
type
sequence R
description BINDING SITE FOR RESIDUE DTP B 1222
source : AC4

11) chain B
residue 425
type
sequence G
description BINDING SITE FOR RESIDUE DTP B 1222
source : AC4

12) chain B
residue 426
type
sequence S
description BINDING SITE FOR RESIDUE DTP B 1222
source : AC4

13) chain B
residue 465
type
sequence D
description BINDING SITE FOR RESIDUE DTP B 1222
source : AC4

14) chain B
residue 817
type
sequence H
description BINDING SITE FOR RESIDUE DTP B 1222
source : AC4


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