|
eF-site ID
|
3deg-CDH |
PDB Code
|
3deg |
Chain
|
C, D, H |
|
click to enlarge
|
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Title
|
Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP |
Classification
|
RIBOSOME |
Compound
|
A/L-tRNA |
Source
|
ORGANISM_SCIENTIFIC: Escherichia coli; |
|
Sequence
|
C: |
MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQV
LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG
HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM
EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWF
DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIF
TPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNP
AEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN
DASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYD
LDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELR
EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVA
LTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM
VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIP
RQQFDIAIQAAIGTHIIARSTVKQL
|
D: |
ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTT
PKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL
IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKR
PKA
|
H: |
AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKA
FNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK
KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGAD
IEAMTRSIEGTARSMGLVVED
|
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Description
|
|
Functional site
|
|
1)
|
chain |
C |
residue |
131 |
type |
MOD_RES |
sequence |
N
|
description |
N,N,N-trimethylalanine => ECO:0000269|PubMed:7004866
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
2)
|
chain |
H |
residue |
1 |
type |
MOD_RES |
sequence |
A
|
description |
N,N,N-trimethylalanine => ECO:0000269|PubMed:7004866
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
3)
|
chain |
H |
residue |
3 |
type |
MOD_RES |
sequence |
K
|
description |
N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:7004866
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
4)
|
chain |
H |
residue |
39 |
type |
MOD_RES |
sequence |
K
|
description |
N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:7004866
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
5)
|
chain |
H |
residue |
71 |
type |
MOD_RES |
sequence |
K
|
description |
N6-succinyllysine => ECO:0000269|PubMed:21151122
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
6)
|
chain |
H |
residue |
80 |
type |
MOD_RES |
sequence |
K
|
description |
N6-succinyllysine => ECO:0000269|PubMed:21151122
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
7)
|
chain |
D |
residue |
42-49 |
type |
prosite |
sequence |
KKPNSALR
|
description |
RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
|
source |
prosite : PS00055
|
|
8)
|
chain |
H |
residue |
126-141 |
type |
prosite |
sequence |
RSIEGTARSMGLVVED
|
description |
RIBOSOMAL_L11 Ribosomal protein L11 signature. RsIeGTarSMGlVVeD
|
source |
prosite : PS00359
|
|
9)
|
chain |
C |
residue |
42-57 |
type |
prosite |
sequence |
DSMDLERERGITIKAQ
|
description |
G_TR_1 Translational (tr)-type guanine nucleotide-binding (G) domain signature. DSmdlEReRGITIkaQ
|
source |
prosite : PS00301
|
|
|
|