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eF-site ID
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3deg-CDH |
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PDB Code
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3deg |
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Chain
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C, D, H |
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click to enlarge
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Title
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Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP |
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Classification
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RIBOSOME |
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Compound
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A/L-tRNA |
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Source
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ORGANISM_SCIENTIFIC: Escherichia coli; |
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Sequence
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C: |
MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQV
LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG
HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM
EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWF
DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIF
TPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNP
AEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN
DASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYD
LDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELR
EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVA
LTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM
VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIP
RQQFDIAIQAAIGTHIIARSTVKQL
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| D: |
ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTT
PKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL
IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKR
PKA
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| H: |
AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKA
FNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK
KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGAD
IEAMTRSIEGTARSMGLVVED
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Description
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Functional site
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1)
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chain |
C |
| residue |
131 |
| type |
MOD_RES |
| sequence |
N
|
| description |
N,N,N-trimethylalanine => ECO:0000269|PubMed:7004866
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| source |
Swiss-Prot : SWS_FT_FI1
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2)
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chain |
H |
| residue |
1 |
| type |
MOD_RES |
| sequence |
A
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| description |
N,N,N-trimethylalanine => ECO:0000269|PubMed:7004866
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| source |
Swiss-Prot : SWS_FT_FI1
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3)
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chain |
H |
| residue |
3 |
| type |
MOD_RES |
| sequence |
K
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| description |
N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:7004866
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| source |
Swiss-Prot : SWS_FT_FI2
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4)
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chain |
H |
| residue |
39 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:7004866
|
| source |
Swiss-Prot : SWS_FT_FI2
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|
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5)
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chain |
H |
| residue |
71 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine => ECO:0000269|PubMed:21151122
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| source |
Swiss-Prot : SWS_FT_FI3
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|
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6)
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chain |
H |
| residue |
80 |
| type |
MOD_RES |
| sequence |
K
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| description |
N6-succinyllysine => ECO:0000269|PubMed:21151122
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| source |
Swiss-Prot : SWS_FT_FI3
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|
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7)
|
chain |
D |
| residue |
42-49 |
| type |
prosite |
| sequence |
KKPNSALR
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| description |
RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
|
| source |
prosite : PS00055
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8)
|
chain |
H |
| residue |
126-141 |
| type |
prosite |
| sequence |
RSIEGTARSMGLVVED
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| description |
RIBOSOMAL_L11 Ribosomal protein L11 signature. RsIeGTarSMGlVVeD
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| source |
prosite : PS00359
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9)
|
chain |
C |
| residue |
42-57 |
| type |
prosite |
| sequence |
DSMDLERERGITIKAQ
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| description |
G_TR_1 Translational (tr)-type guanine nucleotide-binding (G) domain signature. DSmdlEReRGITIkaQ
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| source |
prosite : PS00301
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