eF-site ID 3cmc-O
PDB Code 3cmc
Chain O

click to enlarge
Title Thioacylenzyme intermediate of Bacillus stearothermophilus phosphorylating GAPDH
Classification OXIDOREDUCTASE
Compound Glyceraldehyde-3-phosphate dehydrogenase
Source Geobacillus stearothermophilus (Bacillus stearothermophilus) (G3P_BACST)
Sequence O:  AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTL
AHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE
NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA
PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFA
KVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAA
AESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV
VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLV
SRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSH
RVVDLAAYIASKGL
Description (1)  Glyceraldehyde-3-phosphate dehydrogenase (E.C.1.2.1.12)


Functional site

1) chain O
residue 148
type
sequence S
description BINDING SITE FOR RESIDUE SO4 O 401
source : AC1

2) chain O
residue 207
type
sequence T
description BINDING SITE FOR RESIDUE SO4 O 401
source : AC1

3) chain O
residue 208
type
sequence T
description BINDING SITE FOR RESIDUE SO4 O 401
source : AC1

4) chain O
residue 209
type
sequence G
description BINDING SITE FOR RESIDUE SO4 O 401
source : AC1

5) chain O
residue 210
type
sequence A
description BINDING SITE FOR RESIDUE SO4 O 401
source : AC1

6) chain O
residue 179
type
sequence T
description BINDING SITE FOR RESIDUE SO4 O 402
source : AC5

7) chain O
residue 181
type
sequence D
description BINDING SITE FOR RESIDUE SO4 O 402
source : AC5

8) chain O
residue 195
type
sequence R
description BINDING SITE FOR RESIDUE SO4 O 402
source : AC5

9) chain O
residue 231
type
sequence R
description BINDING SITE FOR RESIDUE SO4 O 402
source : AC5

10) chain O
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE SO4 O 403
source : AC9

11) chain O
residue 183
type
sequence R
description BINDING SITE FOR RESIDUE SO4 O 404
source : BC1

12) chain O
residue 190
type
sequence H
description BINDING SITE FOR RESIDUE SO4 O 404
source : BC1

13) chain O
residue 191
type
sequence K
description BINDING SITE FOR RESIDUE SO4 O 404
source : BC1

14) chain O
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE SO4 O 405
source : BC6

15) chain O
residue 63
type
sequence N
description BINDING SITE FOR RESIDUE SO4 O 405
source : BC6

16) chain O
residue 85
type
sequence G
description BINDING SITE FOR RESIDUE SO4 O 406
source : BC9

17) chain O
residue 111
type
sequence A
description BINDING SITE FOR RESIDUE SO4 O 406
source : BC9

18) chain O
residue 112
type
sequence G
description BINDING SITE FOR RESIDUE SO4 O 406
source : BC9

19) chain O
residue 148
type
sequence S
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

20) chain O
residue 149
type
sequence C
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

21) chain O
residue 150
type
sequence T
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

22) chain O
residue 176
type
sequence H
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

23) chain O
residue 179
type
sequence T
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

24) chain O
residue 208
type
sequence T
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

25) chain O
residue 209
type
sequence G
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

26) chain O
residue 231
type
sequence R
description BINDING SITE FOR RESIDUE G3H O 400
source : CC1

27) chain O
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

28) chain O
residue 9
type
sequence G
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

29) chain O
residue 10
type
sequence R
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

30) chain O
residue 11
type
sequence I
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

31) chain O
residue 31
type
sequence N
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

32) chain O
residue 32
type
sequence D
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

33) chain O
residue 33
type
sequence L
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

34) chain O
residue 77
type
sequence R
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

35) chain O
residue 95
type
sequence S
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

36) chain O
residue 96
type
sequence T
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

37) chain O
residue 97
type
sequence G
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

38) chain O
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

39) chain O
residue 99
type
sequence F
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

40) chain O
residue 119
type
sequence S
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

41) chain O
residue 120
type
sequence A
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

42) chain O
residue 180
type
sequence N
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

43) chain O
residue 313
type
sequence N
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

44) chain O
residue 317
type
sequence Y
description BINDING SITE FOR RESIDUE NAD O 407
source : CC5

45) chain O
residue 303
type
sequence K
description BINDING SITE FOR RESIDUE GOL O 408
source : DC4

46) chain O
residue 208
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3210237, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI5

47) chain O
residue 149
type ACT_SITE
sequence C
description Nucleophile => ECO:0000269|PubMed:18480053, ECO:0000305|PubMed:12569100
source Swiss-Prot : SWS_FT_FI1

48) chain O
residue 10
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI2

49) chain O
residue 32
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI2

50) chain O
residue 77
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI2

51) chain O
residue 119
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI2

52) chain O
residue 180
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI2

53) chain O
residue 313
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI2

54) chain O
residue 148
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3210237, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI3

55) chain O
residue 179
type BINDING
sequence T
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3210237, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI3

56) chain O
residue 231
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:3210237, ECO:0000269|PubMed:3586018, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI3

57) chain O
residue 195
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:12569100, ECO:0000269|PubMed:18480053, ECO:0000269|PubMed:9175858
source Swiss-Prot : SWS_FT_FI4

58) chain O
residue 147-154
type prosite
sequence ASCTTNCL
description GAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL
source prosite : PS00071

59) chain O
residue 176
type SITE
sequence H
description Activates thiol group during catalysis => ECO:0000250|UniProtKB:Q6GIL8
source Swiss-Prot : SWS_FT_FI6


Display surface

Download
Links