eF-site ID 3c7r-AB
PDB Code 3c7r
Chain A, B

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Title Crystal Structure of HIV-1 subtype F DIS extended duplex RNA bound to neomycin
Classification RNA
Compound HIV-1 subtype F genomic RNA
Source (3C7R)
Sequence A:  CUXGCUGAAGUGCACACAGCAAG
B:  CUXGCUGAAGUGCACACAGCAAG
Description


Functional site

1) chain A
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

2) chain A
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

3) chain A
residue 8
type
sequence A
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

4) chain A
residue 9
type
sequence A
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

5) chain A
residue 10
type
sequence G
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

6) chain A
residue 11
type
sequence U
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

7) chain B
residue 13
type
sequence C
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

8) chain B
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

9) chain B
residue 15
type
sequence C
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

10) chain B
residue 16
type
sequence A
description BINDING SITE FOR RESIDUE NMY A 24
source : AC1

11) chain A
residue 13
type
sequence C
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

12) chain A
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

13) chain A
residue 15
type
sequence C
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

14) chain A
residue 16
type
sequence A
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

15) chain A
residue 17
type
sequence C
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

16) chain B
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

17) chain B
residue 8
type
sequence A
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

18) chain B
residue 9
type
sequence A
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

19) chain B
residue 10
type
sequence G
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

20) chain B
residue 11
type
sequence U
description BINDING SITE FOR RESIDUE NMY B 24
source : AC2

21) chain B
residue 3
type
sequence X
description BINDING SITE FOR RESIDUE K B 25
source : AC4

22) chain B
residue 4
type
sequence G
description BINDING SITE FOR RESIDUE K B 25
source : AC4


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