|
eF-site ID
|
3bo0-ABC |
PDB Code
|
3bo0 |
Chain
|
A, B, C |
|
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|
|
Title
|
Ribosome-SecY complex |
Classification
|
RIBOSOME |
Compound
|
23S RIBOSOMAL RNA |
Source
|
ORGANISM_SCIENTIFIC: Escherichia coli; |
|
Sequence
|
A: |
KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMG
CIDVYTAGAQIPAIFEFWQTITASRIGTLITLGIGPIVTA
GIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFV
EAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIV
SKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLI
QGVPNIEYIAPIIGTIIVFLMVVYAECMRRRIVVNYAKRQ
QGRRVYAAQSTHLPLKVVYVSNIPVILAAALFANIQLWGL
ALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPI
HAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIKKSGA
FVPGIRPGEQTAKYIEHRLKRYIPPLTVMSSAFVGFLATI
ANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSELHPAIA
KL
|
B: |
TKGKATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTA
LGISLLGIIGYIIHVPATYIKGILK
|
C: |
ETFSKIRVKPEHVIGVTVAFVIIEAILTYGRF
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
47-55 |
type |
TOPO_DOM |
sequence |
TAGAQIPAI
|
description |
Extracellular
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
2)
|
chain |
A |
residue |
130-140 |
type |
TOPO_DOM |
sequence |
GAFGILTPLLA
|
description |
Extracellular
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
3)
|
chain |
A |
residue |
192-209 |
type |
TOPO_DOM |
sequence |
YLWKFLNSLIQGVPNIEY
|
description |
Extracellular
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
4)
|
chain |
A |
residue |
285-319 |
type |
TOPO_DOM |
sequence |
RMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISD
|
description |
Extracellular
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
5)
|
chain |
A |
residue |
408 |
type |
TOPO_DOM |
sequence |
L
|
description |
Extracellular
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
6)
|
chain |
A |
residue |
56-88 |
type |
TRANSMEM |
sequence |
FEFWQTITASRIGTLITLGIGPIVTAGIIMQLL
|
description |
Discontinuously helical; Name=Helix 2
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
7)
|
chain |
A |
residue |
56-63 |
type |
INTRAMEM |
sequence |
FEFWQTIT
|
description |
Helical; Name=Helix 2A
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
8)
|
chain |
A |
residue |
64-69 |
type |
INTRAMEM |
sequence |
ASRIGT
|
description |
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
9)
|
chain |
A |
residue |
70-88 |
type |
INTRAMEM |
sequence |
LITLGIGPIVTAGIIMQLL
|
description |
Helical; Name=Helix 2B
|
source |
Swiss-Prot : SWS_FT_FI6
|
|
10)
|
chain |
A |
residue |
89-110 |
type |
TOPO_DOM |
sequence |
VGSGIIQMDLSIPENRALFQGC
|
description |
Cytoplasmic
|
source |
Swiss-Prot : SWS_FT_FI7
|
|
11)
|
chain |
A |
residue |
162-168 |
type |
TOPO_DOM |
sequence |
SKYGIGS
|
description |
Cytoplasmic
|
source |
Swiss-Prot : SWS_FT_FI7
|
|
12)
|
chain |
A |
residue |
111-129 |
type |
TRANSMEM |
sequence |
QKLLSIIMCFVEAVLFVGA
|
description |
Helical; Name=Helix 3
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
13)
|
chain |
A |
residue |
141-161 |
type |
TRANSMEM |
sequence |
FLVIIQIAFGSIILIYLDEIV
|
description |
Helical; Name=Helix 4
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
14)
|
chain |
A |
residue |
169-191 |
type |
TRANSMEM |
sequence |
GIGLFIAAGVSQTIFVGALGPEG
|
description |
Helical; Name=Helix 5
|
source |
Swiss-Prot : SWS_FT_FI10
|
|
15)
|
chain |
A |
residue |
210-227 |
type |
TRANSMEM |
sequence |
IAPIIGTIIVFLMVVYAE
|
description |
Helical; Name=Helix 6
|
source |
Swiss-Prot : SWS_FT_FI11
|
|
16)
|
chain |
A |
residue |
263-284 |
type |
TRANSMEM |
sequence |
NIPVILAAALFANIQLWGLALY
|
description |
Helical; Name=Helix 7
|
source |
Swiss-Prot : SWS_FT_FI12
|
|
17)
|
chain |
A |
residue |
320-338 |
type |
TRANSMEM |
sequence |
PIHAIVYMIAMIITCVMFG
|
description |
Helical; Name=Helix 8
|
source |
Swiss-Prot : SWS_FT_FI13
|
|
18)
|
chain |
A |
residue |
393-407 |
type |
TRANSMEM |
sequence |
AFVGFLATIANFIGA
|
description |
Helical; Name=Helix 9
|
source |
Swiss-Prot : SWS_FT_FI14
|
|
19)
|
chain |
A |
residue |
409-422 |
type |
TRANSMEM |
sequence |
GGGTGVLLTVSIVY
|
description |
Helical; Name=Helix 10
|
source |
Swiss-Prot : SWS_FT_FI15
|
|
20)
|
chain |
A |
residue |
75 |
type |
SITE |
sequence |
I
|
description |
Pore ring
|
source |
Swiss-Prot : SWS_FT_FI16
|
|
21)
|
chain |
A |
residue |
79 |
type |
SITE |
sequence |
V
|
description |
Pore ring
|
source |
Swiss-Prot : SWS_FT_FI16
|
|
22)
|
chain |
A |
residue |
174 |
type |
SITE |
sequence |
I
|
description |
Pore ring
|
source |
Swiss-Prot : SWS_FT_FI16
|
|
23)
|
chain |
A |
residue |
179 |
type |
SITE |
sequence |
S
|
description |
Pore ring
|
source |
Swiss-Prot : SWS_FT_FI16
|
|
24)
|
chain |
A |
residue |
267 |
type |
SITE |
sequence |
I
|
description |
Pore ring
|
source |
Swiss-Prot : SWS_FT_FI16
|
|
25)
|
chain |
A |
residue |
416 |
type |
SITE |
sequence |
L
|
description |
Pore ring
|
source |
Swiss-Prot : SWS_FT_FI16
|
|
26)
|
chain |
A |
residue |
405-412 |
type |
prosite |
sequence |
IGALGGGT
|
description |
HMG_COA_REDUCTASE_2 Hydroxymethylglutaryl-coenzyme A reductases signature 2. IGaLGGGT
|
source |
prosite : PS00318
|
|
27)
|
chain |
A |
residue |
69-88 |
type |
prosite |
sequence |
TLITLGIGPIVTAGIIMQLL
|
description |
SECY_1 Protein secY signature 1. TLItLGIgPIVtAGIIMQLL
|
source |
prosite : PS00755
|
|
28)
|
chain |
A |
residue |
156-173 |
type |
prosite |
sequence |
YLDEIVSKYGIGSGIGLF
|
description |
SECY_2 Protein secY signature 2. YLdEiVSky.GIGSGiGLF
|
source |
prosite : PS00756
|
|
29)
|
chain |
C |
residue |
31-49 |
type |
TRANSMEM |
sequence |
EHVIGVTVAFVIIEAILTY
|
description |
Helical
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|