eF-site ID 3b8x-AB PDB Code 3b8x Chain A, B click to enlarge Title Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with bound GDP-perosamine Classification TRANSFERASE Compound Pyridoxamine 5-phosphate-dependent dehydrase Source Escherichia coli (Q9F118_ECOLX) Sequence A:  NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFA KTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII VPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEA VTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCE SMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDD EEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKF VLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD KFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVEN LNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL DKNGLFVGNHQIELFDEIDYLREVLK B:  MINYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQ FAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDE IIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLK EAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDN CESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVT DDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESF KFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYF LDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLV ENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAE YLDKNGLFVGNHQIELFDEIDYLREVLK Description Functional site 1) chain A residue 175 type sequence T description BINDING SITE FOR RESIDUE NA A 669 source : AC1 2) chain A residue 201 type sequence D description BINDING SITE FOR RESIDUE NA A 669 source : AC1 3) chain A residue 6 type sequence L description BINDING SITE FOR RESIDUE NA A 671 source : AC2 4) chain A residue 371 type sequence N description BINDING SITE FOR RESIDUE NA A 671 source : AC2 5) chain A residue 80 type sequence E description BINDING SITE FOR RESIDUE NA A 672 source : AC3 6) chain A residue 103 type sequence K description BINDING SITE FOR RESIDUE NA A 672 source : AC3 7) chain A residue 122 type sequence A description BINDING SITE FOR RESIDUE NA A 672 source : AC3 8) chain A residue 124 type sequence T description BINDING SITE FOR RESIDUE NA A 672 source : AC3 9) chain A residue 126 type sequence S description BINDING SITE FOR RESIDUE NA A 672 source : AC3 10) chain A residue 127 type sequence T description BINDING SITE FOR RESIDUE NA A 672 source : AC3 11) chain A residue 10 type sequence T description BINDING SITE FOR RESIDUE NA A 673 source : AC4 12) chain A residue 188 type sequence N description BINDING SITE FOR RESIDUE NA A 673 source : AC4 13) chain A residue 273 type sequence R description BINDING SITE FOR RESIDUE NA A 673 source : AC4 14) chain A residue 373 type sequence Q description BINDING SITE FOR RESIDUE NA A 673 source : AC4 15) chain B residue 6 type sequence L description BINDING SITE FOR RESIDUE NA B 666 source : AC5 16) chain B residue 371 type sequence N description BINDING SITE FOR RESIDUE NA B 666 source : AC5 17) chain B residue 375 type sequence E description BINDING SITE FOR RESIDUE NA B 667 source : AC6 18) chain B residue 378 type sequence D description BINDING SITE FOR RESIDUE NA B 667 source : AC6 19) chain A residue 242 type sequence F description BINDING SITE FOR RESIDUE NA B 668 source : AC7 20) chain B residue 341 type sequence N description BINDING SITE FOR RESIDUE NA B 668 source : AC7 21) chain B residue 343 type sequence D description BINDING SITE FOR RESIDUE NA B 668 source : AC7 22) chain B residue 175 type sequence T description BINDING SITE FOR RESIDUE NA B 670 source : AC8 23) chain B residue 201 type sequence D description BINDING SITE FOR RESIDUE NA B 670 source : AC8 24) chain A residue 55 type sequence S description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 25) chain A residue 56 type sequence G description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 26) chain A residue 57 type sequence S description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 27) chain A residue 60 type sequence N description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 28) chain A residue 87 type sequence S description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 29) chain A residue 88 type sequence W description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 30) chain A residue 91 type sequence T description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 31) chain A residue 159 type sequence D description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 32) chain A residue 161 type sequence C description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 33) chain A residue 162 type sequence E description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 34) chain A residue 183 type sequence S description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 35) chain A residue 185 type sequence F description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 36) chain A residue 186 type sequence Y description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 37) chain A residue 187 type sequence S description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 38) chain A residue 329 type sequence E description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 39) chain A residue 331 type sequence R description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 40) chain B residue 26 type sequence K description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 41) chain B residue 27 type sequence M description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 42) chain B residue 28 type sequence F description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 43) chain B residue 29 type sequence T description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 44) chain B residue 215 type sequence H description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 45) chain B residue 219 type sequence R description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 46) chain B residue 240 type sequence F description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 47) chain B residue 248 type sequence N description BINDING SITE FOR RESIDUE G4M A 500 source : AC9 48) chain A residue 38 type sequence E description BINDING SITE FOR RESIDUE EDO A 674 source : BC1 49) chain A residue 50 type sequence A description BINDING SITE FOR RESIDUE EDO A 674 source : BC1 50) chain A residue 206 type sequence Y description BINDING SITE FOR RESIDUE EDO A 674 source : BC1 51) chain A residue 9 type sequence S description BINDING SITE FOR RESIDUE EDO A 675 source : BC2 52) chain A residue 10 type sequence T description BINDING SITE FOR RESIDUE EDO A 675 source : BC2 53) chain A residue 11 type sequence W description BINDING SITE FOR RESIDUE EDO A 675 source : BC2 54) chain A residue 268 type sequence R description BINDING SITE FOR RESIDUE EDO A 675 source : BC2 55) chain A residue 373 type sequence Q description BINDING SITE FOR RESIDUE EDO A 675 source : BC2 56) chain A residue 78 type sequence G description BINDING SITE FOR RESIDUE EDO A 676 source : BC3 57) chain A residue 80 type sequence E description BINDING SITE FOR RESIDUE EDO A 676 source : BC3 58) chain A residue 101 type sequence R description BINDING SITE FOR RESIDUE EDO A 676 source : BC3 59) chain A residue 26 type sequence K description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 60) chain A residue 27 type sequence M description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 61) chain A residue 28 type sequence F description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 62) chain A residue 29 type sequence T description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 63) chain A residue 215 type sequence H description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 64) chain A residue 219 type sequence R description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 65) chain A residue 240 type sequence F description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 66) chain A residue 248 type sequence N description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 67) chain B residue 6 type sequence L description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 68) chain B residue 55 type sequence S description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 69) chain B residue 56 type sequence G description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 70) chain B residue 57 type sequence S description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 71) chain B residue 88 type sequence W description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 72) chain B residue 90 type sequence T description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 73) chain B residue 159 type sequence D description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 74) chain B residue 161 type sequence C description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 75) chain B residue 162 type sequence E description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 76) chain B residue 183 type sequence S description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 77) chain B residue 185 type sequence F description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 78) chain B residue 186 type sequence Y description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 79) chain B residue 187 type sequence S description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 80) chain B residue 329 type sequence E description BINDING SITE FOR RESIDUE G4M B 500 source : BC4 81) chain B residue 331 type sequence R description BINDING SITE FOR RESIDUE G4M B 500 source : BC4

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