eF-site ID 3b8x-A
PDB Code 3b8x
Chain A

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Title Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with bound GDP-perosamine
Classification TRANSFERASE
Compound Pyridoxamine 5-phosphate-dependent dehydrase
Source Escherichia coli (Q9F118_ECOLX)
Sequence A:  NYPLASSTWDDLEYKAIQSVLDSKMFTMGEYVKQYETQFA
KTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEII
VPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEA
VTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCE
SMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDD
EEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKF
VLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLD
KFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVEN
LNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL
DKNGLFVGNHQIELFDEIDYLREVLK
Description


Functional site

1) chain A
residue 175
type
sequence T
description BINDING SITE FOR RESIDUE NA A 669
source : AC1

2) chain A
residue 201
type
sequence D
description BINDING SITE FOR RESIDUE NA A 669
source : AC1

3) chain A
residue 6
type
sequence L
description BINDING SITE FOR RESIDUE NA A 671
source : AC2

4) chain A
residue 371
type
sequence N
description BINDING SITE FOR RESIDUE NA A 671
source : AC2

5) chain A
residue 80
type
sequence E
description BINDING SITE FOR RESIDUE NA A 672
source : AC3

6) chain A
residue 103
type
sequence K
description BINDING SITE FOR RESIDUE NA A 672
source : AC3

7) chain A
residue 122
type
sequence A
description BINDING SITE FOR RESIDUE NA A 672
source : AC3

8) chain A
residue 124
type
sequence T
description BINDING SITE FOR RESIDUE NA A 672
source : AC3

9) chain A
residue 126
type
sequence S
description BINDING SITE FOR RESIDUE NA A 672
source : AC3

10) chain A
residue 127
type
sequence T
description BINDING SITE FOR RESIDUE NA A 672
source : AC3

11) chain A
residue 10
type
sequence T
description BINDING SITE FOR RESIDUE NA A 673
source : AC4

12) chain A
residue 188
type
sequence N
description BINDING SITE FOR RESIDUE NA A 673
source : AC4

13) chain A
residue 273
type
sequence R
description BINDING SITE FOR RESIDUE NA A 673
source : AC4

14) chain A
residue 373
type
sequence Q
description BINDING SITE FOR RESIDUE NA A 673
source : AC4

15) chain A
residue 242
type
sequence F
description BINDING SITE FOR RESIDUE NA B 668
source : AC7

16) chain A
residue 55
type
sequence S
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

17) chain A
residue 56
type
sequence G
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

18) chain A
residue 57
type
sequence S
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

19) chain A
residue 60
type
sequence N
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

20) chain A
residue 87
type
sequence S
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

21) chain A
residue 88
type
sequence W
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

22) chain A
residue 91
type
sequence T
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

23) chain A
residue 159
type
sequence D
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

24) chain A
residue 161
type
sequence C
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

25) chain A
residue 162
type
sequence E
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

26) chain A
residue 183
type
sequence S
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

27) chain A
residue 185
type
sequence F
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

28) chain A
residue 186
type
sequence Y
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

29) chain A
residue 187
type
sequence S
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

30) chain A
residue 329
type
sequence E
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

31) chain A
residue 331
type
sequence R
description BINDING SITE FOR RESIDUE G4M A 500
source : AC9

32) chain A
residue 38
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 674
source : BC1

33) chain A
residue 50
type
sequence A
description BINDING SITE FOR RESIDUE EDO A 674
source : BC1

34) chain A
residue 206
type
sequence Y
description BINDING SITE FOR RESIDUE EDO A 674
source : BC1

35) chain A
residue 9
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 675
source : BC2

36) chain A
residue 10
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 675
source : BC2

37) chain A
residue 11
type
sequence W
description BINDING SITE FOR RESIDUE EDO A 675
source : BC2

38) chain A
residue 268
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 675
source : BC2

39) chain A
residue 373
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 675
source : BC2

40) chain A
residue 78
type
sequence G
description BINDING SITE FOR RESIDUE EDO A 676
source : BC3

41) chain A
residue 80
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 676
source : BC3

42) chain A
residue 101
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 676
source : BC3

43) chain A
residue 26
type
sequence K
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

44) chain A
residue 27
type
sequence M
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

45) chain A
residue 28
type
sequence F
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

46) chain A
residue 29
type
sequence T
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

47) chain A
residue 215
type
sequence H
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

48) chain A
residue 219
type
sequence R
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

49) chain A
residue 240
type
sequence F
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4

50) chain A
residue 248
type
sequence N
description BINDING SITE FOR RESIDUE G4M B 500
source : BC4


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