eF-site ID 3b6b-D
PDB Code 3b6b
Chain D

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Title Crystal structure of Acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with dGDP
Classification TRANSFERASE
Compound Nucleoside diphosphate kinase
Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV)
Sequence D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS
KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT
DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS
AVDEISIWFPE
Description


Functional site

1) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE MG D 138
source : AC3

2) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE MG D 138
source : AC3

3) chain D
residue 9
type
sequence K
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

4) chain D
residue 53
type
sequence H
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

5) chain D
residue 58
type
sequence Y
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

6) chain D
residue 62
type
sequence N
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

7) chain D
residue 86
type
sequence R
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

8) chain D
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

9) chain D
residue 106
type
sequence I
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

10) chain D
residue 107
type
sequence R
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

11) chain D
residue 109
type
sequence N
description BINDING SITE FOR RESIDUE DGI D 142
source : AC7

12) chain D
residue 112
type ACT_SITE
sequence H
description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030
source Swiss-Prot : SWS_FT_FI1

13) chain D
residue 9
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI2

14) chain D
residue 58
type BINDING
sequence Y
description
source Swiss-Prot : SWS_FT_FI2

15) chain D
residue 86
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

16) chain D
residue 99
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI2

17) chain D
residue 109
type BINDING
sequence N
description
source Swiss-Prot : SWS_FT_FI2


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