eF-site ID 3b6b-BDF PDB Code 3b6b Chain B, D, F click to enlarge Title Crystal structure of Acanthamoeba polyphaga mimivirus nucleoside diphosphate kinase complexed with dGDP Classification TRANSFERASE Compound Nucleoside diphosphate kinase Source Acanthamoeba polyphaga mimivirus (APMV) (NDK_MIMIV) Sequence B:  LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSK APRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD AISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSA VDEISIWFP D:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFPE F:  GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS KAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGT DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDS AVDEISIWFP Description Functional site 1) chain B residue 53 type sequence H description BINDING SITE FOR RESIDUE MG B 138 source : AC2 2) chain D residue 86 type sequence R description BINDING SITE FOR RESIDUE MG D 138 source : AC3 3) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE MG D 138 source : AC3 4) chain B residue 9 type sequence K description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 5) chain B residue 50 type sequence Y description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 6) chain B residue 53 type sequence H description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 7) chain B residue 58 type sequence Y description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 8) chain B residue 86 type sequence R description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 9) chain B residue 99 type sequence R description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 10) chain B residue 106 type sequence I description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 11) chain B residue 107 type sequence R description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 12) chain B residue 109 type sequence N description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 13) chain B residue 112 type sequence H description BINDING SITE FOR RESIDUE DGI B 140 source : AC5 14) chain D residue 9 type sequence K description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 15) chain D residue 53 type sequence H description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 16) chain D residue 58 type sequence Y description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 17) chain D residue 62 type sequence N description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 18) chain D residue 86 type sequence R description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 19) chain D residue 99 type sequence R description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 20) chain D residue 106 type sequence I description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 21) chain D residue 107 type sequence R description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 22) chain D residue 109 type sequence N description BINDING SITE FOR RESIDUE DGI D 142 source : AC7 23) chain F residue 9 type sequence K description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 24) chain F residue 50 type sequence Y description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 25) chain F residue 53 type sequence H description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 26) chain F residue 58 type sequence Y description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 27) chain F residue 62 type sequence N description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 28) chain F residue 86 type sequence R description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 29) chain F residue 89 type sequence Q description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 30) chain F residue 99 type sequence R description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 31) chain F residue 106 type sequence I description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 32) chain F residue 107 type sequence R description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 33) chain F residue 109 type sequence N description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 34) chain F residue 112 type sequence H description BINDING SITE FOR RESIDUE DGI F 144 source : AC9 35) chain B residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 36) chain D residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 37) chain F residue 112 type ACT_SITE sequence H description Pros-phosphohistidine intermediate => ECO:0000255|PROSITE-ProRule:PRU10030 source Swiss-Prot : SWS_FT_FI1 38) chain B residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 39) chain D residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 40) chain D residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 41) chain D residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 42) chain D residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 43) chain D residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 44) chain F residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 45) chain F residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 46) chain F residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 47) chain F residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 48) chain F residue 109 type BINDING sequence N description source Swiss-Prot : SWS_FT_FI2 49) chain B residue 9 type BINDING sequence K description source Swiss-Prot : SWS_FT_FI2 50) chain B residue 58 type BINDING sequence Y description source Swiss-Prot : SWS_FT_FI2 51) chain B residue 86 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2 52) chain B residue 99 type BINDING sequence R description source Swiss-Prot : SWS_FT_FI2

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