eF-site ID 3a9c-D PDB Code 3a9c Chain D click to enlarge Title Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate Classification ISOMERASE Compound Translation initiation factor eIF-2B, delta subunit Source Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (Q5JFM9_PYRKO) Sequence D:  MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKS KATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRG KIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGA KRIEDGDVIMTHXHSKAAISVMKTAWEQGKDIKVIVTETR PKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMG ADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKFH PETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFD VTPPEYVDVIITERGIIPPYAAIDILREEFGWALKYTEPW ED Description Functional site 1) chain D residue 304 type sequence D description BINDING SITE FOR RESIDUE MG B 411 source : AC6 2) chain D residue 133 type sequence X description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 3) chain D residue 135 type sequence S description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 4) chain D residue 136 type sequence K description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 5) chain D residue 137 type sequence A description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 6) chain D residue 164 type sequence Q description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 7) chain D residue 201 type sequence A description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 8) chain D residue 212 type sequence N description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 9) chain D residue 213 type sequence K description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 10) chain D residue 238 type sequence K description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 11) chain D residue 254 type sequence R description BINDING SITE FOR RESIDUE RUB D 401 source : AC9 12) chain D residue 224 type sequence K description BINDING SITE FOR RESIDUE PEG D 402 source : BC1 13) chain D residue 227 type sequence R description BINDING SITE FOR RESIDUE PEG D 402 source : BC1 14) chain D residue 228 type sequence V description BINDING SITE FOR RESIDUE PEG D 402 source : BC1 15) chain D residue 286 type sequence Y description BINDING SITE FOR RESIDUE PEG D 402 source : BC1 16) chain D residue 288 type sequence D description BINDING SITE FOR RESIDUE PEG D 402 source : BC1 17) chain D residue 227 type SITE sequence R description Plays a key role in hexamerization source Swiss-Prot : SWS_FT_FI5 18) chain D residue 63 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789 source Swiss-Prot : SWS_FT_FI4 19) chain D residue 238 type BINDING sequence K description BINDING => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789 source Swiss-Prot : SWS_FT_FI4 20) chain D residue 133 type ACT_SITE sequence X description Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789 source Swiss-Prot : SWS_FT_FI1 21) chain D residue 202 type ACT_SITE sequence D description Proton donor => ECO:0000255|HAMAP-Rule:MF_02230, ECO:0000269|PubMed:22511789 source Swiss-Prot : SWS_FT_FI2 22) chain D residue 20 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_02230 source Swiss-Prot : SWS_FT_FI3 23) chain D residue 135 type BINDING sequence S description BINDING => ECO:0000255|HAMAP-Rule:MF_02230 source Swiss-Prot : SWS_FT_FI3 24) chain D residue 212 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_02230 source Swiss-Prot : SWS_FT_FI3

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