eF-site ID 2yye-AB
PDB Code 2yye
Chain A, B

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Title Crystal structure of selenophosphate synthetase from Aquifex aeolicus complexed with AMPCPP
Classification TRANSFERASE
Compound Selenide, water dikinase
Source Aquifex aeolicus (strain VF5) (SELD_AQUAE)
Sequence A:  GGIMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDEST
LVSIGDDAGVYEHNGIIWVYTVDIITPVVNDPYLWGAIST
ANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGA
LDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQ
SGAQVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIEN
MLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSN
IGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYL
KSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKEL
EVNYWIIGETIAENVLEVL
B:  GGIEGRHMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYT
DESTLVSIGDDAGVYEHNGIIWVYTVDIITPVVNDPYLWG
AISTANALSDVYAMGGIPVNALAISCFNNCELDIEIFREV
IRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGK
YITQSGAQVGQLLILTKPIGTGILIKGLKEGILKEEDINE
AIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNIC
KNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFV
KNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDET
AKELEVNYWIIGETIAENVLEVL
Description


Functional site

1) chain A
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE CO B 701
source : AC1

2) chain B
residue 132
type
sequence H
description BINDING SITE FOR RESIDUE CO B 701
source : AC1

3) chain A
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE CO A 702
source : AC2

4) chain A
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE CO A 702
source : AC2

5) chain A
residue 219
type
sequence D
description BINDING SITE FOR RESIDUE CO A 702
source : AC2

6) chain A
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE CO A 703
source : AC3

7) chain A
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE CO A 703
source : AC3

8) chain A
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE CO A 704
source : AC4

9) chain A
residue 58
type
sequence T
description BINDING SITE FOR RESIDUE CO A 704
source : AC4

10) chain A
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE CO A 704
source : AC4

11) chain A
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE CO A 704
source : AC4

12) chain A
residue 43
type
sequence D
description BINDING SITE FOR RESIDUE CO A 705
source : AC5

13) chain A
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE CO A 705
source : AC5

14) chain A
residue 86
type
sequence A
description BINDING SITE FOR RESIDUE CO A 705
source : AC5

15) chain A
residue 87
type
sequence M
description BINDING SITE FOR RESIDUE CO A 705
source : AC5

16) chain A
residue 155
type
sequence I
description BINDING SITE FOR RESIDUE CO A 705
source : AC5

17) chain A
residue 217
type
sequence C
description BINDING SITE FOR RESIDUE CO A 705
source : AC5

18) chain A
residue 132
type
sequence H
description BINDING SITE FOR RESIDUE CO A 801
source : AC6

19) chain B
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE CO A 801
source : AC6

20) chain B
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE CO B 802
source : AC7

21) chain B
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE CO B 802
source : AC7

22) chain B
residue 219
type
sequence D
description BINDING SITE FOR RESIDUE CO B 802
source : AC7

23) chain B
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE CO B 803
source : AC8

24) chain B
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE CO B 803
source : AC8

25) chain B
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE CO B 804
source : AC9

26) chain B
residue 58
type
sequence T
description BINDING SITE FOR RESIDUE CO B 804
source : AC9

27) chain B
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE CO B 804
source : AC9

28) chain B
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE CO B 804
source : AC9

29) chain B
residue 43
type
sequence D
description BINDING SITE FOR RESIDUE CO B 805
source : BC1

30) chain B
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE CO B 805
source : BC1

31) chain B
residue 86
type
sequence A
description BINDING SITE FOR RESIDUE CO B 805
source : BC1

32) chain B
residue 87
type
sequence M
description BINDING SITE FOR RESIDUE CO B 805
source : BC1

33) chain B
residue 155
type
sequence I
description BINDING SITE FOR RESIDUE CO B 805
source : BC1

34) chain B
residue 217
type
sequence C
description BINDING SITE FOR RESIDUE CO B 805
source : BC1

35) chain A
residue 259
type
sequence K
description BINDING SITE FOR RESIDUE PO4 B 901
source : BC2

36) chain B
residue 179
type
sequence K
description BINDING SITE FOR RESIDUE PO4 B 901
source : BC2

37) chain B
residue 183
type
sequence E
description BINDING SITE FOR RESIDUE PO4 B 901
source : BC2

38) chain B
residue 260
type
sequence K
description BINDING SITE FOR RESIDUE PO4 B 901
source : BC2

39) chain B
residue 261
type
sequence I
description BINDING SITE FOR RESIDUE PO4 B 901
source : BC2

40) chain B
residue 262
type
sequence Y
description BINDING SITE FOR RESIDUE PO4 B 901
source : BC2

41) chain A
residue 16
type
sequence K
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

42) chain A
residue 22
type
sequence L
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

43) chain A
residue 26
type
sequence L
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

44) chain A
residue 42
type
sequence G
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

45) chain A
residue 43
type
sequence D
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

46) chain A
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

47) chain A
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

48) chain A
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

49) chain A
residue 221
type
sequence T
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

50) chain A
residue 222
type
sequence G
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

51) chain A
residue 223
type
sequence F
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

52) chain B
residue 96
type
sequence A
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

53) chain B
residue 98
type
sequence S
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

54) chain B
residue 130
type
sequence G
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

55) chain B
residue 131
type
sequence G
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

56) chain B
residue 132
type
sequence H
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

57) chain B
residue 133
type
sequence T
description BINDING SITE FOR RESIDUE APC A 501
source : BC3

58) chain A
residue 96
type
sequence A
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

59) chain A
residue 98
type
sequence S
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

60) chain A
residue 130
type
sequence G
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

61) chain A
residue 131
type
sequence G
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

62) chain A
residue 132
type
sequence H
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

63) chain A
residue 133
type
sequence T
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

64) chain B
residue 22
type
sequence L
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

65) chain B
residue 26
type
sequence L
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

66) chain B
residue 42
type
sequence G
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

67) chain B
residue 43
type
sequence D
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

68) chain B
residue 44
type
sequence D
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

69) chain B
residue 60
type
sequence D
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

70) chain B
residue 83
type
sequence D
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

71) chain B
residue 221
type
sequence T
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

72) chain B
residue 222
type
sequence G
description BINDING SITE FOR RESIDUE APC B 601
source : BC4

73) chain A
residue 16
type BINDING
sequence K
description in other chain => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI2

74) chain A
residue 41
type BINDING
sequence I
description in other chain => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI2

75) chain A
residue 60
type BINDING
sequence D
description in other chain => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI2

76) chain B
residue 16
type BINDING
sequence K
description in other chain => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI2

77) chain B
residue 41
type BINDING
sequence I
description in other chain => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI2

78) chain B
residue 60
type BINDING
sequence D
description in other chain => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI2

79) chain A
residue 13
type ACT_SITE
sequence C
description ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI1

80) chain B
residue 13
type ACT_SITE
sequence C
description ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI1

81) chain A
residue 44
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

82) chain A
residue 83
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

83) chain A
residue 131
type BINDING
sequence G
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

84) chain A
residue 219
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

85) chain B
residue 44
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

86) chain B
residue 83
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

87) chain B
residue 131
type BINDING
sequence G
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

88) chain B
residue 219
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI3

89) chain A
residue 16
type SITE
sequence K
description Important for catalytic activity => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI4

90) chain B
residue 16
type SITE
sequence K
description Important for catalytic activity => ECO:0000255|HAMAP-Rule:MF_00625
source Swiss-Prot : SWS_FT_FI4


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