eF-site ID 2y48-A
PDB Code 2y48
Chain A

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Title Crystal structure of LSD1-CoREST in complex with a N-terminal SNAIL peptide
Classification OXIDOREDUCTASE
Compound LYSINE-SPECIFIC DEMETHYLASE 1A
Source null (SNAI1_HUMAN)
Sequence A:  SGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFL
FIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHR
VHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGL
AAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGA
MVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVP
KEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA
LEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNL
KEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALC
KEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDW
HFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGY
SCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTS
QTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAV
QRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGEL
FLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAIL
KGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGN
DYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATV
HGALLSGLREAGRIADQFLGAMYTL
Description


Functional site

1) chain A
residue 285
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

2) chain A
residue 287
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

3) chain A
residue 288
type
sequence V
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

4) chain A
residue 289
type
sequence S
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

5) chain A
residue 307
type
sequence L
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

6) chain A
residue 308
type
sequence E
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

7) chain A
residue 309
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

8) chain A
residue 310
type
sequence R
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

9) chain A
residue 314
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

10) chain A
residue 315
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

11) chain A
residue 316
type
sequence R
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

12) chain A
residue 329
type
sequence L
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

13) chain A
residue 330
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

14) chain A
residue 331
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

15) chain A
residue 332
type
sequence M
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

16) chain A
residue 333
type
sequence V
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

17) chain A
residue 588
type
sequence T
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

18) chain A
residue 589
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

19) chain A
residue 590
type
sequence V
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

20) chain A
residue 624
type
sequence T
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

21) chain A
residue 625
type
sequence L
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

22) chain A
residue 626
type
sequence P
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

23) chain A
residue 756
type
sequence W
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

24) chain A
residue 760
type
sequence S
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

25) chain A
residue 761
type
sequence Y
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

26) chain A
residue 800
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

27) chain A
residue 801
type
sequence E
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

28) chain A
residue 809
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

29) chain A
residue 810
type
sequence T
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

30) chain A
residue 811
type
sequence V
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

31) chain A
residue 814
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 900
source : AC1

32) chain A
residue 611
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI7

33) chain A
residue 442
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI9

34) chain A
residue 469
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI9

35) chain A
residue 503
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:25018020
source Swiss-Prot : SWS_FT_FI10

36) chain A
residue 310
type MOD_RES
sequence R
description Phosphoserine; by PKA => ECO:0000269|PubMed:19923321
source Swiss-Prot : SWS_FT_FI1

37) chain A
residue 316
type MOD_RES
sequence R
description Phosphoserine; by PKA => ECO:0000269|PubMed:19923321
source Swiss-Prot : SWS_FT_FI1

38) chain A
residue 332
type MOD_RES
sequence M
description Phosphoserine; by PKA => ECO:0000269|PubMed:19923321
source Swiss-Prot : SWS_FT_FI1

39) chain A
residue 801
type MOD_RES
sequence E
description Phosphoserine; by PKA => ECO:0000269|PubMed:19923321
source Swiss-Prot : SWS_FT_FI1

40) chain A
residue 810
type MOD_RES
sequence T
description Phosphoserine; by PKA => ECO:0000269|PubMed:19923321
source Swiss-Prot : SWS_FT_FI1

41) chain A
residue 308
type MOD_RES
sequence E
description Phosphoserine; by PKA => ECO:0000269|PubMed:19923321
source Swiss-Prot : SWS_FT_FI1


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