eF-site ID 2xxz-AB
PDB Code 2xxz
Chain A, B

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Title Crystal structure of the human JMJD3 jumonji domain
Classification OXIDOREDUCTASE
Compound LYSINE-SPECIFIC DEMETHYLASE 6B
Source Homo sapiens (Human) (KDM6B_HUMAN)
Sequence A:  REKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITVIRG
LAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENW
DLTGTRQIWPCESSRSHTTIAKYAQYQASSFQESLQEEHH
IIKFGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTGNMLS
HVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIG
PGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPILDDL
YASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWN
VGPLTAYQYQLA
B:  REKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITVIRG
LAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENW
DLTGTRQIWPCESSRSHTTIAKYAQYQASSFQESLQHHII
KFGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTILGMNTV
QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEH
YWETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQ
RPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLA
LERYEW
Description (1)  LYSINE-SPECIFIC DEMETHYLASE 6B (E.C.1.14.11.-)


Functional site

1) chain A
residue 1387
type
sequence H
description BINDING SITE FOR RESIDUE NI A 2494
source : AC1

2) chain A
residue 1389
type
sequence E
description BINDING SITE FOR RESIDUE NI A 2494
source : AC1

3) chain B
residue 1387
type
sequence H
description BINDING SITE FOR RESIDUE NI B 2500
source : AC3

4) chain B
residue 1389
type
sequence E
description BINDING SITE FOR RESIDUE NI B 2500
source : AC3

5) chain A
residue 1287
type
sequence E
description BINDING SITE FOR RESIDUE NA A 2495
source : AC4

6) chain B
residue 1188
type
sequence E
description BINDING SITE FOR RESIDUE NA A 2495
source : AC4

7) chain A
residue 1185
type
sequence I
description BINDING SITE FOR RESIDUE EDO A 2496
source : AC5

8) chain A
residue 1186
type
sequence Y
description BINDING SITE FOR RESIDUE EDO A 2496
source : AC5

9) chain B
residue 1200
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 2496
source : AC5

10) chain A
residue 1204
type
sequence D
description BINDING SITE FOR RESIDUE EDO A 2497
source : AC6

11) chain A
residue 1489
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 2497
source : AC6

12) chain B
residue 1183
type
sequence P
description BINDING SITE FOR RESIDUE EDO A 2497
source : AC6

13) chain B
residue 1184
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 2497
source : AC6

14) chain B
residue 1201
type
sequence F
description BINDING SITE FOR RESIDUE EDO A 2497
source : AC6

15) chain A
residue 1330
type
sequence D
description BINDING SITE FOR RESIDUE EDO A 2498
source : AC7

16) chain A
residue 1370
type
sequence M
description BINDING SITE FOR RESIDUE EDO A 2498
source : AC7

17) chain A
residue 1191
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 2501
source : AC8

18) chain B
residue 1190
type
sequence K
description BINDING SITE FOR RESIDUE EDO B 2501
source : AC8

19) chain B
residue 1191
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 2501
source : AC8

20) chain B
residue 1497
type
sequence Y
description BINDING SITE FOR RESIDUE EDO B 2501
source : AC8

21) chain A
residue 1227
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 2499
source : AC9

22) chain A
residue 1228
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 2499
source : AC9

23) chain A
residue 1401
type
sequence G
description BINDING SITE FOR RESIDUE EDO A 2499
source : AC9

24) chain A
residue 1476
type
sequence N
description BINDING SITE FOR RESIDUE EDO A 2499
source : AC9

25) chain A
residue 1376
type
sequence Y
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

26) chain A
residue 1378
type
sequence K
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

27) chain A
residue 1384
type
sequence T
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

28) chain A
residue 1387
type
sequence H
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

29) chain A
residue 1389
type
sequence E
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

30) chain A
residue 1397
type
sequence N
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

31) chain A
residue 1407
type
sequence W
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

32) chain A
residue 1461
type
sequence I
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

33) chain A
residue 1467
type
sequence H
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

34) chain A
residue 1477
type
sequence N
description BINDING SITE FOR RESIDUE 8XQ A 3001
source : BC1

35) chain B
residue 1376
type
sequence Y
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

36) chain B
residue 1378
type
sequence K
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

37) chain B
residue 1384
type
sequence T
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

38) chain B
residue 1387
type
sequence H
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

39) chain B
residue 1389
type
sequence E
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

40) chain B
residue 1397
type
sequence N
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

41) chain B
residue 1407
type
sequence W
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

42) chain B
residue 1467
type
sequence H
description BINDING SITE FOR RESIDUE 8XQ B 3001
source : BC2

43) chain A
residue 1470
type BINDING
sequence Q
description BINDING => ECO:0000250|UniProtKB:O14607
source Swiss-Prot : SWS_FT_FI2

44) chain B
residue 1470
type BINDING
sequence Q
description BINDING => ECO:0000250|UniProtKB:O14607
source Swiss-Prot : SWS_FT_FI2

45) chain A
residue 1390
type BINDING
sequence N
description BINDING => ECO:0000305
source Swiss-Prot : SWS_FT_FI1

46) chain A
residue 1392
type BINDING
sequence N
description BINDING => ECO:0000305
source Swiss-Prot : SWS_FT_FI1

47) chain B
residue 1390
type BINDING
sequence N
description BINDING => ECO:0000305
source Swiss-Prot : SWS_FT_FI1

48) chain B
residue 1392
type BINDING
sequence N
description BINDING => ECO:0000305
source Swiss-Prot : SWS_FT_FI1


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