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eF-site ID
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2vrt-D |
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PDB Code
|
2vrt |
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Chain
|
D |
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click to enlarge
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Title
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Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain |
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Classification
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HYDROLASE |
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Compound
|
RIBONUCLEASE E |
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Source
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Escherichia coli (strain K12) (2VRT) |
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Sequence
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D: |
MKRMLINATQQEELRVALVDGQRLYDLDIESPEQKKANIY
KGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPN
IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL
MPNNPRAGGISRRIEDDRTELKEALASLELPEGMGLIVRT
AGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQE
SNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP
DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGS
IVIDSTEALTAIDINSARDIEETAFNTNLEAADEIARQLR
LRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ
ISHISRFGLLEMSRQRLSSHHVCPRCSGTGTVRDNESLSL
SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNA
IETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM
LPKLHEE
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Description
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Functional site
|
|
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1)
|
chain |
D |
| residue |
404 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN D1509
|
| source |
: AC2
|
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2)
|
chain |
D |
| residue |
407 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE ZN D1509
|
| source |
: AC2
|
|
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3)
|
chain |
D |
| residue |
303 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:16237448
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
4)
|
chain |
D |
| residue |
346 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:16237448
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
5)
|
chain |
D |
| residue |
404 |
| type |
BINDING |
| sequence |
C
|
| description |
BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
6)
|
chain |
D |
| residue |
407 |
| type |
BINDING |
| sequence |
C
|
| description |
BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
|