eF-site ID 2vpl-ABCD PDB Code 2vpl Chain A, B, C, D click to enlarge Title The structure of the complex between the first domain of L1 protein from Thermus thermophilus and mRNA from Methanococcus jannaschii Classification TRANSLATION Compound 50S RIBOSOMAL PROTEIN L1 Source (2VPL) Sequence A:  PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDET VEVHAKLGIDPRRSDQNVRGTVSLPHGGRIEFRNDKTGAI HAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRS VYVTTTMGPSVRINPHS B:  GGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACU UCACUCCC C:  PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDET VEVHAKLGIDPRRSDQNVRGTVSLPHGGRIEFRNDKTGAI HAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRS VYVTTTMGPSVRINPHS D:  GGAGUGAAGGAGGCUCGCGAUCGCGAAGCCGAGAAACUUC ACUCCC Description Functional site 1) chain A residue 42 type sequence E description BINDING SITE FOR RESIDUE K A 1229 source : AC1 2) chain A residue 216 type sequence T description BINDING SITE FOR RESIDUE K A 1229 source : AC1 3) chain A residue 217 type sequence T description BINDING SITE FOR RESIDUE K A 1229 source : AC1 4) chain B residue 41 type sequence U description BINDING SITE FOR RESIDUE K A 1229 source : AC1 5) chain B residue 42 type sequence U description BINDING SITE FOR RESIDUE K A 1229 source : AC1 6) chain C residue 42 type sequence E description BINDING SITE FOR RESIDUE K C 1229 source : AC2 7) chain C residue 216 type sequence T description BINDING SITE FOR RESIDUE K C 1229 source : AC2 8) chain C residue 217 type sequence T description BINDING SITE FOR RESIDUE K C 1229 source : AC2 9) chain D residue 41 type sequence U description BINDING SITE FOR RESIDUE K C 1229 source : AC2 10) chain D residue 42 type sequence U description BINDING SITE FOR RESIDUE K C 1229 source : AC2 11) chain A residue 1-46 type prosite sequence PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDET VEVHAK description TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. pkhgkryrallekvdpnkiytideaahlvkelatakfd.............................................................................ETVEVHAK source prosite : PS00430

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