eF-site ID 2vmk-C
PDB Code 2vmk
Chain C

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Title Crystal Structure of E. coli RNase E Apoprotein - Catalytic Domain
Classification HYDROLASE
Compound RIBONUCLEASE E
Source Escherichia coli (strain K12) (RNE_ECOLI)
Sequence C:  MKRMLINATQQLRVALVDGQRLYDLDIESPGKKANIYKGK
ITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFRPNIKDV
LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN
PRAGGISRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRD
YLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT
GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSAGDIEETAFNTNLEAADEIARQLRLRDLGGLIVI
DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL
EMSRQRLSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL
KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV
IVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLH
Description


Functional site

1) chain C
residue 404
type
sequence C
description BINDING SITE FOR RESIDUE ZN D1516
source : AC2

2) chain C
residue 407
type
sequence C
description BINDING SITE FOR RESIDUE ZN D1516
source : AC2

3) chain C
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE SO4 C1507
source : AC5

4) chain C
residue 170
type
sequence T
description BINDING SITE FOR RESIDUE SO4 C1507
source : AC5

5) chain C
residue 171
type
sequence A
description BINDING SITE FOR RESIDUE SO4 C1507
source : AC5

6) chain C
residue 404
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

7) chain C
residue 407
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

8) chain C
residue 303
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

9) chain C
residue 346
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1


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