eF-site ID 2vmk-ABCD
PDB Code 2vmk
Chain A, B, C, D

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Title Crystal Structure of E. coli RNase E Apoprotein - Catalytic Domain
Classification HYDROLASE
Compound RIBONUCLEASE E
Source Escherichia coli (strain K12) (RNE_ECOLI)
Sequence A:  MKRMLINATQQEELRVALVDGQRLYDLDIESEQKKANIYK
GKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPNI
KDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM
PNNPRAGGISRRIRTELKEALASLELPEGMGLIVRTAGVG
KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI
VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS
KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID
STEALTAIDINSARDIEETAFNTNLEAADEIARQLRLRDL
GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHI
SRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL
SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAV
NAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLS
YMLPKLHEE
B:  MKRMLINATLRVALVDGQRLYDLDIHEQKKANIYKGKITR
IEPSLEAAFVDYGAERHGFLPLKEIAREYFPARPNIKDVL
REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP
RAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG
KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI
VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS
KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID
STEALTAIDINSARGDIEETAFNTNLEAADEIARQLRLRD
LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISH
ISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES
LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSA
VNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTL
SYMLPKLHEEAMALP
C:  MKRMLINATQQLRVALVDGQRLYDLDIESPGKKANIYKGK
ITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFRPNIKDV
LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN
PRAGGISRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRD
YLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT
GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSAGDIEETAFNTNLEAADEIARQLRLRDLGGLIVI
DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL
EMSRQRLSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL
KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV
IVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLH
D:  MKRMLINATLRVALVDGQRLYDLDIQKKANIYKGKITRIE
PSLEAAFVDAERHGFLPLKEIAREYFPRPNIKDVLREGQE
VIVQIDKEERALTTFISLAGSYLVLMPNNPRAGGDDRTEL
KEALASLELPEGMGLIVRTASAEALQWDLSFRLKHWEAIK
KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK
VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQI
ESAFQREVRLPSGGSIVIDSTEALTAIDINSADIEETAFN
TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN
RLREAVRQDRARIQISHISRFGLLEMSRQRLSLGESSHHV
CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV
PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH
YHVLRVRKGEETPTLSYMLPKLHEEAMALPSE
Description


Functional site

1) chain A
residue 404
type
sequence C
description BINDING SITE FOR RESIDUE ZN B1514
source : AC1

2) chain A
residue 407
type
sequence C
description BINDING SITE FOR RESIDUE ZN B1514
source : AC1

3) chain B
residue 404
type
sequence C
description BINDING SITE FOR RESIDUE ZN B1514
source : AC1

4) chain B
residue 407
type
sequence C
description BINDING SITE FOR RESIDUE ZN B1514
source : AC1

5) chain C
residue 404
type
sequence C
description BINDING SITE FOR RESIDUE ZN D1516
source : AC2

6) chain C
residue 407
type
sequence C
description BINDING SITE FOR RESIDUE ZN D1516
source : AC2

7) chain D
residue 404
type
sequence C
description BINDING SITE FOR RESIDUE ZN D1516
source : AC2

8) chain D
residue 407
type
sequence C
description BINDING SITE FOR RESIDUE ZN D1516
source : AC2

9) chain A
residue 140
type
sequence S
description BINDING SITE FOR RESIDUE SO4 A1509
source : AC3

10) chain A
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE SO4 A1509
source : AC3

11) chain A
residue 170
type
sequence T
description BINDING SITE FOR RESIDUE SO4 A1509
source : AC3

12) chain B
residue 170
type
sequence T
description BINDING SITE FOR RESIDUE SO4 B1515
source : AC4

13) chain C
residue 169
type
sequence R
description BINDING SITE FOR RESIDUE SO4 C1507
source : AC5

14) chain C
residue 170
type
sequence T
description BINDING SITE FOR RESIDUE SO4 C1507
source : AC5

15) chain C
residue 171
type
sequence A
description BINDING SITE FOR RESIDUE SO4 C1507
source : AC5

16) chain A
residue 303
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 346
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

18) chain B
residue 303
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

19) chain B
residue 346
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

20) chain C
residue 303
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

21) chain C
residue 346
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

22) chain D
residue 303
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

23) chain D
residue 346
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16237448
source Swiss-Prot : SWS_FT_FI1

24) chain A
residue 404
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

25) chain A
residue 407
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

26) chain B
residue 404
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

27) chain B
residue 407
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

28) chain C
residue 404
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

29) chain C
residue 407
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

30) chain D
residue 404
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2

31) chain D
residue 407
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:15779893, ECO:0000269|PubMed:18682225
source Swiss-Prot : SWS_FT_FI2


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