|
eF-site ID
|
2vdm-B |
PDB Code
|
2vdm |
Chain
|
B |
|
click to enlarge
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Title
|
Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist Tirofiban |
Classification
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CELL ADHESION/IMMUNE SYSTEM |
Compound
|
INTEGRIN ALPHA-IIB |
Source
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ORGANISM_COMMON: MOUSE; ORGANISM_SCIENTIFIC: MUS MUSCULUS; |
|
Sequence
|
B: |
GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDL
KENLLKDNCAPESIEFPVSEARVLEDRPLSDKSQVTQVSP
QRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMK
DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYM
YISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNE
EVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL
LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSAST
TMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI
PGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEE
LSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRG
CPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNS
HRCNNGNGTFECGVCR
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Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
121 |
type |
BINDING |
sequence |
S
|
description |
in MIDAS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
2)
|
chain |
B |
residue |
220 |
type |
BINDING |
sequence |
E
|
description |
in MIDAS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
3)
|
chain |
B |
residue |
123 |
type |
BINDING |
sequence |
S
|
description |
in MIDAS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
4)
|
chain |
B |
residue |
126 |
type |
BINDING |
sequence |
D
|
description |
in ADMIDAS binding site => ECO:0000269|PubMed:11546839, ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:1JV2, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
5)
|
chain |
B |
residue |
127 |
type |
BINDING |
sequence |
D
|
description |
in ADMIDAS binding site => ECO:0000269|PubMed:11546839, ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:1JV2, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
6)
|
chain |
B |
residue |
158 |
type |
BINDING |
sequence |
D
|
description |
in LIMBS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
7)
|
chain |
B |
residue |
215 |
type |
BINDING |
sequence |
N
|
description |
in LIMBS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
8)
|
chain |
B |
residue |
217 |
type |
BINDING |
sequence |
D
|
description |
in LIMBS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
9)
|
chain |
B |
residue |
219 |
type |
BINDING |
sequence |
P
|
description |
in LIMBS binding site => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3FCU
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
10)
|
chain |
B |
residue |
251 |
type |
BINDING |
sequence |
D
|
description |
in LIMBS binding site => ECO:0007744|PDB:4G1M
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
11)
|
chain |
B |
residue |
335 |
type |
BINDING |
sequence |
M
|
description |
in ADMIDAS binding site and unliganded-closed conformation => ECO:0000269|PubMed:11546839, ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:1JV2, ECO:0007744|PDB:3FCS, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI6
|
|
12)
|
chain |
B |
residue |
99 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI7
|
|
13)
|
chain |
B |
residue |
320 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:11546839, ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:1JV2, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
14)
|
chain |
B |
residue |
371 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:11546839, ECO:0000269|PubMed:15378069, ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:1JV2, ECO:0007744|PDB:1TYE, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
15)
|
chain |
B |
residue |
452 |
type |
CARBOHYD |
sequence |
N
|
description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19111664, ECO:0000269|PubMed:19704023, ECO:0007744|PDB:3IJE
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
|
|