eF-site ID 2uua-D
PDB Code 2uua
Chain D

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Title Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.
Classification RIBOSOME
Compound 16S RRNA
Source ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;
Sequence D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG
QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE
ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV
RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN
LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR
Description


Functional site

1) chain D
residue 9
type
sequence C
description binding site for residue ZN D 301
source : AT8

2) chain D
residue 12
type
sequence C
description binding site for residue ZN D 301
source : AT8

3) chain D
residue 19
type
sequence L
description binding site for residue ZN D 301
source : AT8

4) chain D
residue 26
type
sequence C
description binding site for residue ZN D 301
source : AT8

5) chain D
residue 31
type
sequence C
description binding site for residue ZN D 301
source : AT8

6) chain D
residue 82
type
sequence A
description binding site for residue MG D 302
source : AT9

7) chain D
residue 83
type
sequence S
description binding site for residue MG D 302
source : AT9

8) chain D
residue 85
type
sequence K
description binding site for residue MG D 302
source : AT9

9) chain D
residue 87
type
sequence G
description binding site for residue MG D 302
source : AT9

10) chain D
residue 89
type
sequence T
description binding site for residue MG D 302
source : AT9

11) chain D
residue 97-121
type prosite
sequence LESRLDNVVYRLGFAVSRRQARQLV
description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
source prosite : PS00632


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